Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09720 652 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G47330 201 / 4e-56 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G63120 194 / 7e-55 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G55150 189 / 8e-54 DEA(D/H)-box RNA helicase family protein (.1) AT1G20920 186 / 7e-51 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G33730 181 / 2e-49 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58570 177 / 2e-48 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G42520 176 / 4e-48 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G01540 174 / 2e-47 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT3G58510 172 / 9e-47 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G038300 [exp] 196 / 3e-56 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G083000 [exp] 193 / 2e-54 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.012G084600 [exp] 192 / 1e-53 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G194600 [exp] 192 / 8e-53 AT2G47330 1048 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.019G064900 [exp] 174 / 9e-53 AT3G09720 138 / 7e-40 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G196000 [exp] 183 / 1e-50 AT3G58570 790 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G003600 [exp] 184 / 8e-50 AT1G20920 1201 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G347100 [exp] 181 / 3e-49 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.005G257400 [exp] 181 / 1e-48 AT1G20920 1253 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026871 [exp] 617 / 0 AT3G09720 673 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013644 [exp] 566 / 0 AT3G09720 614 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037527 [exp] 194 / 1e-53 AT2G47330 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015627 [exp] 188 / 3e-53 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10037646 [exp] 187 / 9e-53 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10011466 [exp] 194 / 1e-52 AT2G47330 1110 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019484 [exp] 185 / 4e-51 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10043334 [exp] 184 / 5e-51 AT5G63120 752 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10016207 [exp] 177 / 2e-48 AT2G42520 850 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035327 [exp] 178 / 9e-48 AT1G20920 993 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit
Representative CDS sequence Show only first row Show all	>Potri.019G065300.1 pacid=42773215 polypeptide=Potri.019G065300.1.p locus=Potri.019G065300 ID=Potri.019G065300.1.v4.1 annot-version=v4.1 ATGGAGAAAGACACCTCCTTTTTACTCACTGGCATCAAATTCAATAAGAAGAGGTTTGCCGGTGATTTTTCCCGCTTCAAGAAGAGAAAACAAAGAAATG ATGATAGTCCAGTGGATGATTTGAGCTACTTCAAAAGAGAAGATACTGAAGCAGAGAAAGTGGTAGTTTCTGTCAATAAGAAGAGGAAGAGGAAAACTAA AGCAGAAAGGGTGGAGGGGTTCAGTGTGTTTAAGGGTTCAGATTCGGTGCCGGTAGTGACCGATGAAGGAAGTGAACAGGAGGAAAATAATCAGAAGGAA TTAAATAGGCAAAATGAGCGGGATTTACGTTTAAGGAAGAAGTATGGCATCCATGTCTCTGGAAACAACGTTCCATCCCCTCTGCAAAGTTTTGCAGAGT TAAGCACAAGATATGGATGTGAGTCATATTTATTGCACAATTTGGTAAAACTTGGATTTAAGGAGCCAACACCAATTCAAAGGCAGGCTATTCCAGTCCT CCTATCTGGTCGGGAATGCTTTGCAAAAGCGCCAACTGGATCTGGGAAAACTTTGGCTTTTGTGTATCCCATGCTCATGAAATTGAAGCAACCATCAAAG GATGGGATCAGAACTGTTATCTTGTGTCATACACGAGAGTTAGCAGCTCAGACAACCAGGGAGTGCAAGAAAATGGCTAAAGGAAGTAAATTCCGTATTA AGCTAATGACCAAAGAGCTTTTGAGAAATACTGATTTCACAAAGCTACCTTGTGATATCCTTATATCAACACCTCGTCGTTTACAGTTATGTATCTGCAA GAAGAAGAAGAAGATAGACTTAAGCAGGGTTGAGTATCTTGTTCTCGATGAATCTGATAAGCTATTTGAGCGCAGCTTGTTAGAGCAGACTGATTCTGTG GTGAAAGCATGCTCTAACCCATCGATAATACGTTCTCTGTTTAGTGCTACCCTACCTGGTTTTGTCGAGGATGTTGCACGCACTGTTATGCATGATGCTG TTAGAATTATTGTTGGTGACAAGAATGCAGCTTCTGAATCTATCAAACAAAAATTGATATTCGCTGGAAGTGAAGAAGGAAAACTTCTTGCACTCCGACA AAGCTTCGCAGAGAGTCTGAATCCACCAATGTTGATCTTTGTTCAAAGCATTGAGCGAGCAGAAGAACTATATGGAGAGCTGAAATTTGACAGCATTAGA GTTGGTGTTATTCATTCGAATCTATCACAGGAGCAGCGAGAGAGTGTAATCGATGACTTCAGAGCTGGAAAGACATGGGTTTTGATTGCAACTGATGTGC TTGGTCGGGGTATGGATTTCAAAGGTGTCAAGTGTGTAATTAATTATGATTTCCCAGATTGTGCTGCTTCATACATTCACAGGATTGGTCGGTCGGGCAG AGCAGGGAGGATTGGTGAAGCTATTACTTTCTACACGGAACATGATATTCCATATTTGCGAAACATAGCTAATGTGATGACTGCTTCAGGCTGTGAGGTT CCATCTTGGCTCACGGATATGCCCAAAAAGAAGTGGAAGAAGCACTGTCCACGAAGAGAATCAATCTCAACAAAACCAAAAGATGAGGAAGAATGA
AA sequence Show only first row Show all	>Potri.019G065300.1 pacid=42773215 polypeptide=Potri.019G065300.1.p locus=Potri.019G065300 ID=Potri.019G065300.1.v4.1 annot-version=v4.1 MEKDTSFLLTGIKFNKKRFAGDFSRFKKRKQRNDDSPVDDLSYFKREDTEAEKVVVSVNKKRKRKTKAERVEGFSVFKGSDSVPVVTDEGSEQEENNQKE LNRQNERDLRLRKKYGIHVSGNNVPSPLQSFAELSTRYGCESYLLHNLVKLGFKEPTPIQRQAIPVLLSGRECFAKAPTGSGKTLAFVYPMLMKLKQPSK DGIRTVILCHTRELAAQTTRECKKMAKGSKFRIKLMTKELLRNTDFTKLPCDILISTPRRLQLCICKKKKKIDLSRVEYLVLDESDKLFERSLLEQTDSV VKACSNPSIIRSLFSATLPGFVEDVARTVMHDAVRIIVGDKNAASESIKQKLIFAGSEEGKLLALRQSFAESLNPPMLIFVQSIERAEELYGELKFDSIR VGVIHSNLSQEQRESVIDDFRAGKTWVLIATDVLGRGMDFKGVKCVINYDFPDCAASYIHRIGRSGRAGRIGEAITFYTEHDIPYLRNIANVMTASGCEV PSWLTDMPKKKWKKHCPRRESISTKPKDEEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G09720			P-loop containing nucleoside t...		Potri.019G065300 [exp]	0	1
AT1G63810			unknown protein		Potri.007G024600 [exp]	1.41	0.8749
AT1G30240			unknown protein		Potri.010G238000 [exp]	2.00	0.8531
AT5G62190		PRH75	DEAD box RNA helicase (PRH75) ...		Potri.015G133400 [exp]	2.23	0.8211	PRH75.2
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Potri.009G047500 [exp]	2.82	0.8243
AT1G10490			Domain of unknown function (DU...		Potri.007G079300 [exp]	5.74	0.8454
AT4G01560		MEE49	maternal effect embryo arrest ...		Potri.002G182600 [exp]	7.74	0.7888
AT2G34357			ARM repeat superfamily protein...		Potri.006G137900 [exp]	8.48	0.7970
AT1G72440		SWA2, EDA25	SLOW WALKER2, embryo sac devel...		Potri.001G164100 [exp]	10.39	0.7947
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Potri.001G423600 [exp]	10.67	0.8080
AT1G74240			Mitochondrial substrate carrie...		Potri.012G066000 [exp]	12.96	0.7641

Compare expression of checked genes

Potri.019G065300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.