Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40815 213 / 1e-66 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G01200 56 / 7e-09 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G33320 57 / 1e-08 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G13350 56 / 2e-08 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G04540 52 / 2e-07 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G04360 51 / 5e-07 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G23950 49 / 1e-06 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G09070 44 / 6e-05 (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, soybean gene regulated by cold-2 (.1) AT2G45760 43 / 0.0001 BAL, BAP2 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G048400 [exp] 60 / 7e-10 AT2G33320 211 / 6e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G172300 [exp] 59 / 2e-09 AT2G33320 265 / 8e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G064900 [exp] 57 / 4e-09 AT1G07310 150 / 1e-42 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.012G144600 [exp] 56 / 1e-08 AT5G23950 166 / 2e-50 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.010G065300 [exp] 56 / 2e-08 AT2G13350 261 / 6e-83 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G458101 [exp] 52 / 2e-08 AT2G13350 74 / 1e-16 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.019G021300 [exp] 54 / 5e-08 AT3G04360 213 / 2e-65 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G108300 [exp] 50 / 2e-07 AT2G45760 59 / 7e-11 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Potri.002G166400 [exp] 51 / 3e-07 AT4G01200 211 / 4e-68 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030501 [exp] 216 / 5e-68 AT2G40815 168 / 4e-49 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10012856 [exp] 209 / 9e-61 AT1G76820 1211 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Lus10003570 [exp] 63 / 8e-11 AT2G33320 222 / 7e-67 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10032780 [exp] 62 / 1e-10 AT2G33320 227 / 1e-70 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10014466 [exp] 61 / 2e-10 AT1G04540 245 / 7e-76 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10027502 [exp] 53 / 7e-08 AT5G23950 164 / 8e-50 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10008004 [exp] 49 / 7e-07 AT2G45760 56 / 1e-09 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Lus10039259 [exp] 50 / 1e-06 AT5G23950 160 / 3e-48 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10024505 [exp] 48 / 2e-06 AT2G45760 58 / 3e-10 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Lus10002155 [exp] 45 / 4e-05 AT4G01200 224 / 7e-73 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Potri.019G065500.2 pacid=42774477 polypeptide=Potri.019G065500.2.p locus=Potri.019G065500 ID=Potri.019G065500.2.v4.1 annot-version=v4.1 ATGGGTAAAATTTGGGTTGAAGTTTGCTTGATCTCTGCTCGAGGACTCCGGCGCACTTCCTCACTTTGGAAGCTTCAATGGTTTGCTGTTGGCTGGATTG ATCCGAAGAACAAATATTGTACCAAGATCGATGCCTCTGGAAATGCGAATCCCACATGGAAAACCAAGTTTGCTACCTTGCTTGATGATTCAGACTTTCA AGATATGGCACTGCACGTTGAGGTATACAGCAGGGAGCCCATTTTTCTGAGAGAAAGACTTGAAGGGACTGCGACTGTGGTCCTCAAAGAATTCCTGGCA AAGTATAGCAACAGCAATGAGGCCTCAAGGCCAGGAACTGAAGAAGTAGGGAGCTATCAACTACGCAAAAGAAATTCCAGTAAACCTCAAGGATTTGTAG ACGTTTCAATTCATATCTCCGAGGAAAGGGAACAGTCAAGTTCATACCCAGGCAACGAAGGAGGGATTATGCTCATGGACCACAACAACAAGATTACACT ACCTACTGAAGGGTCAGGGAAAGCTTTCCCTTCAGAACTGCCTCTAGGTTCACTCCGACAACCGGAAAACCATTCATCAAGTGTTGCATACAATCATCCA CTGCCATACCCTGCAAATTATTCCAATCCATCAGTAGGTGGCCCAAGTTACCCACCAGCAGCTGGTCCAAGCTATCAACCATCTCGAACTCCTCCACCAC CACCTCCACCATCTAATGTTGGTTACATGCCAACTATTCTTCCAAATACAGATTATATAAATATGCCATCTTCAGTAGCAGCAGCTGGACCCCGAGGTCC ACGACCTGGTTTGGCGATGGGAGTTGGTGCTGGAGCTTTGGCCGCTGGTGCTGTCATATTTGGTGATGACTTTATGTCAGGATTTGATATTCTGACTGGC TTACATGATCCTAGTCTTACAATAACAACAAATCCTCCTTTTTGA
AA sequence Show only first row Show all	>Potri.019G065500.2 pacid=42774477 polypeptide=Potri.019G065500.2.p locus=Potri.019G065500 ID=Potri.019G065500.2.v4.1 annot-version=v4.1 MGKIWVEVCLISARGLRRTSSLWKLQWFAVGWIDPKNKYCTKIDASGNANPTWKTKFATLLDDSDFQDMALHVEVYSREPIFLRERLEGTATVVLKEFLA KYSNSNEASRPGTEEVGSYQLRKRNSSKPQGFVDVSIHISEEREQSSSYPGNEGGIMLMDHNNKITLPTEGSGKAFPSELPLGSLRQPENHSSSVAYNHP LPYPANYSNPSVGGPSYPPAAGPSYQPSRTPPPPPPPSNVGYMPTILPNTDYINMPSSVAAAGPRGPRPGLAMGVGAGALAAGAVIFGDDFMSGFDILTG LHDPSLTITTNPPF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40815			Calcium-dependent lipid-bindin...		Potri.019G065500 [exp]	0	1
AT2G17420		NTR2, ATNTRA, N...	NADPH-DEPENDENT THIOREDOXIN RE...		Potri.011G145100 [exp]	1.00	0.8992
AT2G34190			Xanthine/uracil permease famil...		Potri.004G058800 [exp]	3.87	0.8659
AT3G13560			O-Glycosyl hydrolases family 1...		Potri.001G006500 [exp]	4.47	0.8890
AT1G29980			Protein of unknown function, D...		Potri.011G087500 [exp]	6.00	0.8546
AT2G41990			unknown protein		Potri.009G140600 [exp]	6.70	0.8366
AT1G52190			Major facilitator superfamily ...		Potri.001G185700 [exp]	7.07	0.8500
AT1G79760		DTA4	downstream target of AGL15-4 (...		Potri.011G047800 [exp]	7.93	0.8100	DTA4.2
AT3G50780			unknown protein		Potri.007G032800 [exp]	9.38	0.8084
AT1G10380			Putative membrane lipoprotein ...		Potri.010G158500 [exp]	10.24	0.8425
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Potri.002G124800 [exp]	12.48	0.8474

Compare expression of checked genes

Potri.019G065500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.