Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19770 338 / 3e-112 ATVPS9A ARABIDOPSIS THALIANA VACUOLAR PROTEIN SORTING 9A, Vacuolar sorting protein 9 (VPS9) domain (.1), Vacuolar sorting protein 9 (VPS9) domain (.2) AT5G09320 330 / 6e-107 VPS9B Vacuolar sorting protein 9 (VPS9) domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G171500 [exp] 343 / 2e-114 AT3G19770 536 / 0.0 ARABIDOPSIS THALIANA VACUOLAR PROTEIN SORTING 9A, Vacuolar sorting protein 9 (VPS9) domain (.1), Vacuolar sorting protein 9 (VPS9) domain (.2) Potri.013G092250 [exp] 210 / 1e-66 AT3G19770 120 / 8e-32 ARABIDOPSIS THALIANA VACUOLAR PROTEIN SORTING 9A, Vacuolar sorting protein 9 (VPS9) domain (.1), Vacuolar sorting protein 9 (VPS9) domain (.2) Potri.013G092100 [exp] 145 / 2e-42 AT3G19770 65 / 6e-13 ARABIDOPSIS THALIANA VACUOLAR PROTEIN SORTING 9A, Vacuolar sorting protein 9 (VPS9) domain (.1), Vacuolar sorting protein 9 (VPS9) domain (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035376 [exp] 363 / 9e-123 AT3G19770 572 / 0.0 ARABIDOPSIS THALIANA VACUOLAR PROTEIN SORTING 9A, Vacuolar sorting protein 9 (VPS9) domain (.1), Vacuolar sorting protein 9 (VPS9) domain (.2) Lus10030981 [exp] 335 / 7e-112 AT3G19770 516 / 0.0 ARABIDOPSIS THALIANA VACUOLAR PROTEIN SORTING 9A, Vacuolar sorting protein 9 (VPS9) domain (.1), Vacuolar sorting protein 9 (VPS9) domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02204 [poplar] [flax] VPS9 Vacuolar sorting protein 9 (VPS9) domain
Representative CDS sequence Show only first row Show all	>Potri.019G066200.2 pacid=42774251 polypeptide=Potri.019G066200.2.p locus=Potri.019G066200 ID=Potri.019G066200.2.v4.1 annot-version=v4.1 ATGGACACTGCAGCGAGTCAATCATCGTCATCGTCATCGTCATCGTCATCGTCAATTATGTTTTATGATTTTCTTGATAAAATGCGAAATCCTGCTTCTC TCAATCTAGTCAAATCCATTAAAAGCTTCATTGTATCATTCCAATTTTCGTCTGCGAACCCTGAAAATGATAGCAAAAGGGTACAAGAGTTTTTCTCAAC AATGGAAGCAGCTATCATGGAACATCCATTATGGGCTGGTGCCACTGATGATGAATTTGATTGCTCAATGGAGGGACTGGAGAAATACATCATGACGAAA TTGTTCTCCCGAACATTTGCTATTTCTCCCGAGGATGTGAAGATTGACCAAGAGATCTCTGAGAAGATACACTTGTTGCAATCCTTTTTACGGCCTGAGC ATTTGGATATTCCTCCATTTCTTCAGAATGAAGCTTCATGGCTGCTTGCAGAAAAGGAATTGCAGAAGATCAATGCTTTCAGAGCTCCTCGTGAGAAGCT TCACTGTATTATGAGCTGCTGCAGGATCATCAACAATTTGCTGCTCAATGCATCAATGTCAGAAAATCATGTACCGGGAGGGGCCGATGACTTTCTTCCT GTTCTTATATATGTCACAATCAAGGCCAATCCTCCTCAGTTGCATTCAAACCTCAAATACATCCAATTGTACAGGAGGCAAGAAACAATGGTATCTGAAC CAGCTTATTATTTCACGAATCTTGTCTCAGCCAAGTCCTTTATTGGCCAGTTAGATGCCAAATCTCTTTCTATGGATGAAATTGAATTTGAAGAGAGCAT GCAAGCAGCTAAGTTGGACAGCAAGGTATCACAAGTAGAAGCTTCACAGGCACAGACAGATCCTATTTTTTCTACAAGAATGCATGGCATGAAAACAAAT ATAGATGGCAGATCAAATTATCCATATATGGAAGCTGAGCCTGGTGAACTGACTGTTGAAGACGTGGAAAGATTGCTGAGTCTGTACAAAGATGTGGTTA CAAAGTACTCTAGCCTCTGCAGGGCTGTTAGGCATCGCTCTGCAACCAGAACAGAACCATCCCTTCCTGTTCCTAAAGGGAGAGATGACATTTTATTGCA ACTTGAGGGACAAGCACAAATGATCCGAGAGGAGAAGGCAGAGGTCAGTGATACAACGAAAGGATGCTGA
AA sequence Show only first row Show all	>Potri.019G066200.2 pacid=42774251 polypeptide=Potri.019G066200.2.p locus=Potri.019G066200 ID=Potri.019G066200.2.v4.1 annot-version=v4.1 MDTAASQSSSSSSSSSSSIMFYDFLDKMRNPASLNLVKSIKSFIVSFQFSSANPENDSKRVQEFFSTMEAAIMEHPLWAGATDDEFDCSMEGLEKYIMTK LFSRTFAISPEDVKIDQEISEKIHLLQSFLRPEHLDIPPFLQNEASWLLAEKELQKINAFRAPREKLHCIMSCCRIINNLLLNASMSENHVPGGADDFLP VLIYVTIKANPPQLHSNLKYIQLYRRQETMVSEPAYYFTNLVSAKSFIGQLDAKSLSMDEIEFEESMQAAKLDSKVSQVEASQAQTDPIFSTRMHGMKTN IDGRSNYPYMEAEPGELTVEDVERLLSLYKDVVTKYSSLCRAVRHRSATRTEPSLPVPKGRDDILLQLEGQAQMIREEKAEVSDTTKGC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19770		ATVPS9A	ARABIDOPSIS THALIANA VACUOLAR ...		Potri.019G066200 [exp]	0	1
AT1G19980			cytomatrix protein-related (.1...		Potri.002G022200 [exp]	8.36	0.6892
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Potri.017G129000 [exp]	17.23	0.6295
AT5G03340			ATPase, AAA-type, CDC48 protei...		Potri.006G125500 [exp]	19.18	0.6053	CDC48.3
AT3G59310			Eukaryotic protein of unknown ...		Potri.003G030800 [exp]	21.16	0.6811
AT5G24910		ELA1, CYP714A1	EUI-like p450 A1, cytochrome P...		Potri.019G064200 [exp]	21.63	0.6481
AT2G21120			Protein of unknown function (D...		Potri.001G305700 [exp]	24.97	0.6044
AT3G24750			unknown protein		Potri.002G240300 [exp]	25.51	0.6345
AT1G60900			U2 snRNP auxilliary factor, la...		Potri.011G050400 [exp]	26.22	0.5884
AT4G18593			dual specificity protein phosp...		Potri.016G035700 [exp]	34.20	0.5660
AT2G32730			26S proteasome regulatory comp...		Potri.001G314300 [exp]	35.49	0.6010

Compare expression of checked genes

Potri.019G066200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.