Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21651 717 / 0 zinc ion binding (.1) AT1G21650 708 / 0 SECA2 Preprotein translocase SecA family protein (.1.2.3) AT1G24530 79 / 3e-15 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18860 73 / 7e-13 transducin family protein / WD-40 repeat family protein (.1.2) AT5G50120 67 / 1e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 66 / 4e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT1G49450 66 / 5e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18950 64 / 3e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT2G26490 64 / 3e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT5G16750 64 / 3e-10 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G202700 [exp] 76 / 3e-14 AT3G51930 531 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G050900 [exp] 74 / 2e-13 AT1G24530 483 / 5e-170 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G022900 [exp] 70 / 2e-12 AT3G51930 523 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G076000 [exp] 70 / 3e-12 AT5G50120 417 / 5e-145 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G070900 [exp] 69 / 7e-12 AT5G50120 398 / 2e-137 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G150700 [exp] 69 / 1e-11 AT3G18860 1099 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.002G051900 [exp] 66 / 3e-11 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G112184 [exp] 67 / 6e-11 AT3G18860 1128 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.T125104 [exp] 66 / 6e-11 AT3G18860 1114 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028560 [exp] 876 / 0 AT1G21650 687 / 0.0 Preprotein translocase SecA family protein (.1.2.3) Lus10018865 [exp] 773 / 0 AT1G21650 573 / 0.0 Preprotein translocase SecA family protein (.1.2.3) Lus10014674 [exp] 66 / 3e-11 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 65 / 5e-11 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10024180 [exp] 66 / 6e-11 AT3G51930 494 / 2e-174 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039568 [exp] 66 / 7e-11 AT3G51930 498 / 6e-176 Transducin/WD40 repeat-like superfamily protein (.1) Lus10033092 [exp] 66 / 1e-10 AT1G52360 1481 / 0.0 Coatomer, beta' subunit (.1.2) Lus10040490 [exp] 65 / 2e-10 AT3G18860 1103 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10026094 [exp] 63 / 3e-10 AT3G15980 406 / 1e-135 Coatomer, beta' subunit (.1.2.3.4.5) Lus10036881 [exp] 63 / 6e-10 AT1G24530 409 / 5e-141 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.019G066500.1 pacid=42773417 polypeptide=Potri.019G066500.1.p locus=Potri.019G066500 ID=Potri.019G066500.1.v4.1 annot-version=v4.1 ATGGAATCACCGGAATTACCAGAATGTCCGGTGTGTCTATCAACCTACGACGGCGAGTACACTATCCCAAGAGTACTCGCATGTGGGCATACAACCTGCG AGTCATGCCTTAAAAATATCCCACAGAAATACCCTCTAACCATTCGCTGTCCTGCATGTACACAACTTGTCAAGTACCCATCACAGCAAGGCCCTTCTTC ACTTCCTAAAAACATTGATCTCCTTAGGCTGGTTCAGCAGCTACAAGATCATAATCCCCAGAAACCCAACAACAAATCCCAAATTGACAAACCAGTCCTT GCTCAAGACTTTGACTTCTTTGTGCCTCCTTCATGGTCTGATGAGTTTTATACTTCATGGAAGAACTGGGTTCTTGACAGAGATGATGTTTTTGTTGAGG ATAAAGAGAGAGGATATGGGTTGTTAAAGGAGGGGAATAAAAAGGTGAAGGTGAGGCTTTTTAAGGTTGGCAATGATGGGGGTTTGTTGAGTGGTAAAGT TAAAGGATGTGTTTTTAAGTTGAGTTATGTTGCCAAGGTTATGAATTTGTTGAATGGGATGAAGGAGGAGAAGAGAGATGAATTGGGTTTTATTTTGAGG ATTTGTGCTAAACAGGGAAGAATCTGTAAGGGTTGTGGTTTGTGGTGTGATTTGGAAGATGGGGTTTTGTATTTTGTGTGTGAGAGACTTAATGGGAATG TTTTGGATATGTTGGGTGATTTTGAGAATGGTTTGAGCAAAGATGGTTTGTCTAGTTTTGCAATGATTGGAATGGAAATGTATGAAGCAGTGATTGGATT GCATTTGGAAGGGCTAATTGTGGGAAGTTTAGGTGTTTCTTGCTTTGAATTGGATGGTTTTGGACATGTGAGTCTAAGTTTGAGTGAGGTTTTGGTGATG GGAAGGGCAGTTCATGATGGGGTTATGGAACTTGGTTCTGGTGGGAGAAGTTTAAGTGTTAAAAAATTGGGGAGATTGGTCGGTGAGATTTTGAAAAAGG AGGTTTTTGTGAGCCCAGAGGTTTTGTTTGGGATATTGAAGAGAGAGGGTATGGAGGTAGAATGTGGTAGCAATAGATATCCAATTGGCCTTGGCTCTGA TGTTTGGACATTAGCTTGTACTGTCCTTAGAATGCTTATCGGGAAAGAATTCTTTGAGGAGCTAGGTGATCATGTAGATTCTATCATTTCAAAAAGAAGT GAAGACAATAATTTGGACTGTTCGGGTCTTTACACTGGTTTGATGGAGAAAGTCAGCTCTTTGTTGGAAAGTAAAACCGGTGAAGAATTGAAACCATTGC ACCAGATGCTATGCAGGTCTTTGAGTTTTGATCCAGGGAATCGTCCACATGCTATTGATATGTGGAAGTGTATTAGGGACTTATTTATTAGACATCAGCA TGATACTTCTGTTCCCAGATTGGGTGAGGCTATCCATGAGGAGAATAAGGAGCATGTGCGAGTTCTTGGAGAACTATGTTGGGTGCCCCTAAAAAAATCA ACTCTTAAAAAATCCGAGTTAGCAGAAAAAAACAGTGGAGAAAATCAAGATCAAAGCGAGGACGTGAGAAATGATAAAGATATCGCTGAGGCTCTCGTGG AGGGGAAGGTCAAGTTCAAAGAAATGCAGGGCCATCTTGATTGTGTTACAGGATTTGCCATTGGAGGAGGATTTCTGTTTAGCTCCTCATTTGATAAAAC AGTCCAGGTCTGGTCCTTGCAGGACTTCTCTCATATGCACACATTTAAGGGCCATGAGCATAAAGTCATGGCTGTAATTTATGTTGATGAAGAACTACCA TTATGCATTAGTGGGGATGGTGGAGGTGGCATATTTCTCTGGAGCATCAGTGTTCCTATGGGGAAAGAACCATTGAAGACATGGTATGAGCAAAAAGATT GGCGTTATAGTGGAATTCATGCCTTGACCACTGCAGGGAATGGGTATCTCTATACTGGTAGTGGAGATAGGTCAGTTAAGGCTTGGTCATTGCAGGATGG CACCCTGTCATGCATTATGGATGGTCATAAATCAGTAGTTTCCACGCTAGCAGCATGTGATGGGATTCTTTATAGTGGGAGTTGGGATGGAACCATCCGT CTGTGGAGTCTAACTGATCATAGTCCTTTGACAGTGTTGGGAAATGACTTGCCAGGAACTGCAACCTCTGTCTTGTCTGTCACTGCAAACCAGAATATTC TTGTTGCAGCCCATGAAAATGGACAGATAAAGGCATGGAGGGATGACGTGTTTAAGAAATCGACACAATGCCACAGTGGTGCGATTTTGGCTTGTGTCAT GGAGGGAAAATGGCTATTCACCGGAGGTTGGGACAAAATTGTCAACGTACAGGAGTTGTCTGGAGATGAATTTCAGGTGGATACTAGACCCATTGGATCA ATCCCAGGAGGTTCTGTGGTAACAGCTTTATTATGCTGGCAAGGAAAGCTTTTCGTTGGTCATGGAGATAGGACTATCAAGGTATACTACCATGGAAAGT GA
AA sequence Show only first row Show all	>Potri.019G066500.1 pacid=42773417 polypeptide=Potri.019G066500.1.p locus=Potri.019G066500 ID=Potri.019G066500.1.v4.1 annot-version=v4.1 MESPELPECPVCLSTYDGEYTIPRVLACGHTTCESCLKNIPQKYPLTIRCPACTQLVKYPSQQGPSSLPKNIDLLRLVQQLQDHNPQKPNNKSQIDKPVL AQDFDFFVPPSWSDEFYTSWKNWVLDRDDVFVEDKERGYGLLKEGNKKVKVRLFKVGNDGGLLSGKVKGCVFKLSYVAKVMNLLNGMKEEKRDELGFILR ICAKQGRICKGCGLWCDLEDGVLYFVCERLNGNVLDMLGDFENGLSKDGLSSFAMIGMEMYEAVIGLHLEGLIVGSLGVSCFELDGFGHVSLSLSEVLVM GRAVHDGVMELGSGGRSLSVKKLGRLVGEILKKEVFVSPEVLFGILKREGMEVECGSNRYPIGLGSDVWTLACTVLRMLIGKEFFEELGDHVDSIISKRS EDNNLDCSGLYTGLMEKVSSLLESKTGEELKPLHQMLCRSLSFDPGNRPHAIDMWKCIRDLFIRHQHDTSVPRLGEAIHEENKEHVRVLGELCWVPLKKS TLKKSELAEKNSGENQDQSEDVRNDKDIAEALVEGKVKFKEMQGHLDCVTGFAIGGGFLFSSSFDKTVQVWSLQDFSHMHTFKGHEHKVMAVIYVDEELP LCISGDGGGGIFLWSISVPMGKEPLKTWYEQKDWRYSGIHALTTAGNGYLYTGSGDRSVKAWSLQDGTLSCIMDGHKSVVSTLAACDGILYSGSWDGTIR LWSLTDHSPLTVLGNDLPGTATSVLSVTANQNILVAAHENGQIKAWRDDVFKKSTQCHSGAILACVMEGKWLFTGGWDKIVNVQELSGDEFQVDTRPIGS IPGGSVVTALLCWQGKLFVGHGDRTIKVYYHGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21651			zinc ion binding (.1)		Potri.019G066500 [exp]	0	1
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Potri.001G179800 [exp]	1.73	0.8685
					Potri.005G043750 [exp]	2.23	0.8980
AT3G09670			Tudor/PWWP/MBT superfamily pro...		Potri.010G216900 [exp]	4.69	0.8493
AT3G58110			unknown protein		Potri.019G091700 [exp]	6.92	0.8537
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Potri.001G082100 [exp]	9.38	0.8677
AT2G16485			nucleic acid binding;zinc ion ...		Potri.009G123800 [exp]	11.61	0.8664
AT5G27230			Frigida-like protein (.1)		Potri.005G043900 [exp]	12.72	0.8591
AT2G35540			DNAJ heat shock N-terminal dom...		Potri.003G097800 [exp]	13.41	0.8508
AT5G27230			Frigida-like protein (.1)		Potri.005G044000 [exp]	14.69	0.8353
AT3G63500			Protein of unknown function (D...		Potri.001G264100 [exp]	15.16	0.8501

Compare expression of checked genes

Potri.019G066500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.