Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07820 404 / 6e-140 Pectin lyase-like superfamily protein (.1) AT3G07830 397 / 5e-137 Pectin lyase-like superfamily protein (.1) AT3G07840 389 / 6e-134 Pectin lyase-like superfamily protein (.1) AT5G48140 389 / 7e-134 Pectin lyase-like superfamily protein (.1) AT3G14040 364 / 2e-123 Pectin lyase-like superfamily protein (.1) AT3G07850 361 / 3e-122 Pectin lyase-like superfamily protein (.1) AT4G18180 335 / 1e-112 Pectin lyase-like superfamily protein (.1) AT1G17150 317 / 1e-105 Pectin lyase-like superfamily protein (.1) AT1G78400 312 / 1e-103 Pectin lyase-like superfamily protein (.1) AT2G33160 308 / 4e-99 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G067166 [exp] 763 / 0 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067200 [exp] 763 / 0 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067133 [exp] 763 / 0 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G066800 [exp] 694 / 0 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067000 [exp] 694 / 0 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067050 [exp] 694 / 0 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.007G035800 [exp] 493 / 6e-175 AT3G07820 350 / 7e-119 Pectin lyase-like superfamily protein (.1) Potri.009G169100 [exp] 346 / 9e-117 AT4G18180 563 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G202100 [exp] 338 / 7e-114 AT1G02790 399 / 2e-137 polygalacturonase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003001 [exp] 420 / 1e-141 AT3G07840 362 / 1e-118 Pectin lyase-like superfamily protein (.1) Lus10043088 [exp] 399 / 2e-138 AT3G07820 360 / 6e-123 Pectin lyase-like superfamily protein (.1) Lus10039154 [exp] 390 / 4e-134 AT5G48140 335 / 8e-113 Pectin lyase-like superfamily protein (.1) Lus10013784 [exp] 386 / 9e-133 AT5G48140 337 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10013780 [exp] 386 / 9e-133 AT5G48140 337 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10009606 [exp] 351 / 3e-119 AT3G07840 323 / 4e-108 Pectin lyase-like superfamily protein (.1) Lus10041059 [exp] 339 / 1e-113 AT3G07830 310 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10041058 [exp] 339 / 1e-113 AT3G07830 311 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10009605 [exp] 342 / 1e-112 AT3G07840 317 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10043087 [exp] 292 / 3e-98 AT3G07840 268 / 4e-89 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF00295 [poplar] [flax] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Potri.019G067100.1 pacid=42773139 polypeptide=Potri.019G067100.1.p locus=Potri.019G067100 ID=Potri.019G067100.1.v4.1 annot-version=v4.1 ATGGGCCTGAAAGTTGTCTCCTCAGCAATAATATCATTCTCACTGTTTTTATTGTTAGCATCAACTGCTAAAGCCCAATCAAAAGGTGTCTTCGATGTGA CTAAATATGGTTCCGATAAAGATATCACAGAGGCTTTAACCAATGCTTGGAAAGATGCTTGTGCTTCAACAAACCCCAGCAAAGTTCTTATTCCAAGTGG GACATACTCGTTACGGAAATTGACTCTAGCAGGTCCTTGCAAGGCTGCGATTGAGCTCCAAGTTGATGGCATGTTGAAGGCACCGGTTGACCCAAATCAG TTCTCAGGAGGGCATTGGGTTAATTTCGGACACGTTGATAAATTTACATTGTCGGGAAGCGGCACTTTTGATGGGCAGGGAAAGGCTGCGTGGAGCAAAA GTACATGTCAGAAAGATAAAGATTGTGACAGCCTCCCAATGAATTTAAGGTTCGATTTCATCACCAATGCATTAGTCCGAGATATAACTACTCTAGATAG CAAGAACTTTCATGTTAACGTCTTGGGGTGCAAAAACCTCACCTTCCAGCATTTTACCGTGAGTGCACCTGGTGAGAGTGTAAACACCGATGGAATCCAT GTCGGCCAATCTACTGGGATCTACATTATCGATTCAAAAATTGGCACAGGCGATGATTGTATCTCCGTGGGAGATGGCACCGAAGAACTACATATCACAG GAGTAACATGTGGACCTGGCCATGGCATCAGTGTTGGAAGTTTAGGGAAATACCCCAATGAGAAACCTGTTTCTGGAATATTTGTCAAGAATTGCACCAT CTCAGATACTACAAATGGCGTTAGAATAAAATCTTGGCCAGCTTTATACGGTGGTGTCGCATCTAACATGCATTTTGAGGATATTGTCATGAACAATGTC CAAAACCCTGTCATCATAGATCAAGTGTATTGCCCATGGAACCAATGCAGTCTAAAGGCTCCATCAAAAGTGAAGATCAGTGGTGTTAGTTTTAAGAATA TAAGGGGAACTTCCGCAACTCCGGTTGTTGTGCAGATTGCTTGCAGCAGCGGCTTCCCATGTGAGAAGGTGGAGCTTGCTGACATTAAAGTTGCATATAG CGGACCAGACGGCCCTGCAAAATCCCAGTGTTCTAACGTTAAGCCCATAATTTCTGGGACAATGAGCGCACCCGGATGTTGA
AA sequence Show only first row Show all	>Potri.019G067100.1 pacid=42773139 polypeptide=Potri.019G067100.1.p locus=Potri.019G067100 ID=Potri.019G067100.1.v4.1 annot-version=v4.1 MGLKVVSSAIISFSLFLLLASTAKAQSKGVFDVTKYGSDKDITEALTNAWKDACASTNPSKVLIPSGTYSLRKLTLAGPCKAAIELQVDGMLKAPVDPNQ FSGGHWVNFGHVDKFTLSGSGTFDGQGKAAWSKSTCQKDKDCDSLPMNLRFDFITNALVRDITTLDSKNFHVNVLGCKNLTFQHFTVSAPGESVNTDGIH VGQSTGIYIIDSKIGTGDDCISVGDGTEELHITGVTCGPGHGISVGSLGKYPNEKPVSGIFVKNCTISDTTNGVRIKSWPALYGGVASNMHFEDIVMNNV QNPVIIDQVYCPWNQCSLKAPSKVKISGVSFKNIRGTSATPVVVQIACSSGFPCEKVELADIKVAYSGPDGPAKSQCSNVKPIISGTMSAPGC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07820			Pectin lyase-like superfamily ...		Potri.019G067100 [exp]	0	1
					Potri.017G120650 [exp]	4.89	1.0000
					Potri.007G014501 [exp]	5.19	1.0000
AT3G07820			Pectin lyase-like superfamily ...		Potri.019G067133 [exp]	6.70	1.0000
AT1G68620			alpha/beta-Hydrolases superfam...		Potri.008G118400 [exp]	9.48	0.9998
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Potri.006G101200 [exp]	11.00	0.9997
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Potri.006G101100 [exp]	11.40	0.9993
AT1G30135	ZIM	TIFY5A, JAZ8	jasmonate-zim-domain protein 8...		Potri.006G023301 [exp]	12.48	0.9939
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.008G033500 [exp]	12.64	0.9990
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Potri.007G118600 [exp]	12.84	0.9992
AT3G11840		PUB24	plant U-box 24 (.1)		Potri.009G016100 [exp]	12.96	0.9993

Compare expression of checked genes

Potri.019G067100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.