Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07820 400 / 2e-138 Pectin lyase-like superfamily protein (.1) AT3G07830 392 / 2e-135 Pectin lyase-like superfamily protein (.1) AT3G07840 387 / 3e-133 Pectin lyase-like superfamily protein (.1) AT5G48140 384 / 7e-132 Pectin lyase-like superfamily protein (.1) AT3G14040 363 / 6e-123 Pectin lyase-like superfamily protein (.1) AT3G07850 360 / 9e-122 Pectin lyase-like superfamily protein (.1) AT4G18180 332 / 2e-111 Pectin lyase-like superfamily protein (.1) AT1G17150 314 / 2e-104 Pectin lyase-like superfamily protein (.1) AT1G78400 308 / 3e-102 Pectin lyase-like superfamily protein (.1) AT2G33160 305 / 6e-98 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G067166 [exp] 771 / 0 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067133 [exp] 771 / 0 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067100 [exp] 763 / 0 AT3G07820 404 / 5e-140 Pectin lyase-like superfamily protein (.1) Potri.019G066800 [exp] 692 / 0 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067000 [exp] 692 / 0 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067050 [exp] 692 / 0 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.007G035800 [exp] 492 / 1e-174 AT3G07820 350 / 7e-119 Pectin lyase-like superfamily protein (.1) Potri.009G169100 [exp] 343 / 2e-115 AT4G18180 563 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G202100 [exp] 338 / 1e-113 AT1G02790 399 / 2e-137 polygalacturonase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003001 [exp] 422 / 2e-142 AT3G07840 362 / 1e-118 Pectin lyase-like superfamily protein (.1) Lus10043088 [exp] 403 / 1e-139 AT3G07820 360 / 6e-123 Pectin lyase-like superfamily protein (.1) Lus10039154 [exp] 391 / 1e-134 AT5G48140 335 / 8e-113 Pectin lyase-like superfamily protein (.1) Lus10013784 [exp] 388 / 3e-133 AT5G48140 337 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10013780 [exp] 388 / 3e-133 AT5G48140 337 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10009606 [exp] 353 / 1e-119 AT3G07840 323 / 4e-108 Pectin lyase-like superfamily protein (.1) Lus10041059 [exp] 341 / 2e-114 AT3G07830 310 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10041058 [exp] 340 / 4e-114 AT3G07830 311 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10009605 [exp] 343 / 5e-113 AT3G07840 317 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10043087 [exp] 295 / 2e-99 AT3G07840 268 / 4e-89 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF00295 [poplar] [flax] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Potri.019G067200.1 pacid=42773476 polypeptide=Potri.019G067200.1.p locus=Potri.019G067200 ID=Potri.019G067200.1.v4.1 annot-version=v4.1 ATGGGCCTGAAAGTTGTCTCCTCAGCAATAATATCATTCTCACTGTTTTTATTGTTAGCATCAACTGCTAAAGCCCAATCAAAAGGTGTCTTCGATGTGA CTAAATATGGTTCCGATAAAGATATCACAGAGGCTTTAACCAATGCTTGGAAAGATGCTTGTGCTTCAACAAACCCCAGCAAAGTTCTTATTCCAAGTGG GACATACTCGTTACGGAAATTGACTCTAGCAGGTCCTTGCAAGGCTGCGATTGAGCTCCAAGTTGATGGCATGTTGAAGGCACCGGTTGACCCAAATCAG TTCTCAGGAGGGCATTGGGTTAATTTCGGACACGTTGATAAATTTACATTGTCGGGAAGCGGCACTTTTGATGGGCAGGGAAAGGCTGCGTGGAGCAAAA GTACATGTCAGAAAGATAAAGATTGTGACAGCCTCCCAATGAATTTAAGGTTCGATTTCATCACCAATGCATTAGTCCGAGATATAACTACTCGAGATAG CAAGAACTTTCATGTTAACGTCTTGGGGTGCAAAAACCTCACCTTCCAGCATTTTACCGTGAGTGCACCTGGTGAGAGTGTAAACACCGATGGAATCCAT GTCGGCCAATCTACTGGGATCTACATTATCGATTCAAAAATTGGCACAGGCGATGATTGTATCTCCGTGGGAGATGGCACCGAAGAACTACATATCACAG GAGTAACATGTGGACCTGGCCATGGCATCAGTGTTGGAAGTTTAGGGAAATACCCCAATGAGAAACCTGTTTCTGGAATATTTGTCAAGAATTGCACCCT CTCAGATACTACAAATGGCGTTAGAATAAAATCTTGGCCAGCTTTATACGGTGGTGTCGCATCTAACATGCATTTTGAGGATATTGTCATGAACAATGTC CAAAACCCTGTCATCATAGATCAAGTGTATTGCCCATGGAACCAATGCAGTCTAAAGGCTCCATCAAAAGTGAAGATCAGTGGTGTTAGTTTTAAGAATA TAAGGGGAACTTCCGCAACTCCGGTTGTTGTGCAGATTGCTTGCAGCAGTGGCTTCCCATGTGAGAAGGTGGAGCTTGCTGACATTAAACTTGCATATAG CGGACCAGACGGCCCTTCAAAATCCCAATGTTCTAACGTTAAGCCCATAATTTCTGGGATAATGAGCGCACCCGGATGTTGA
AA sequence Show only first row Show all	>Potri.019G067200.1 pacid=42773476 polypeptide=Potri.019G067200.1.p locus=Potri.019G067200 ID=Potri.019G067200.1.v4.1 annot-version=v4.1 MGLKVVSSAIISFSLFLLLASTAKAQSKGVFDVTKYGSDKDITEALTNAWKDACASTNPSKVLIPSGTYSLRKLTLAGPCKAAIELQVDGMLKAPVDPNQ FSGGHWVNFGHVDKFTLSGSGTFDGQGKAAWSKSTCQKDKDCDSLPMNLRFDFITNALVRDITTRDSKNFHVNVLGCKNLTFQHFTVSAPGESVNTDGIH VGQSTGIYIIDSKIGTGDDCISVGDGTEELHITGVTCGPGHGISVGSLGKYPNEKPVSGIFVKNCTLSDTTNGVRIKSWPALYGGVASNMHFEDIVMNNV QNPVIIDQVYCPWNQCSLKAPSKVKISGVSFKNIRGTSATPVVVQIACSSGFPCEKVELADIKLAYSGPDGPSKSQCSNVKPIISGIMSAPGC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07820			Pectin lyase-like superfamily ...		Potri.019G067200 [exp]	0	1
AT3G07820			Pectin lyase-like superfamily ...		Potri.019G067166 [exp]	1.00	0.9973
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Potri.009G134400 [exp]	15.42	0.8494	Pt-BGAL11.2
					Potri.017G120650 [exp]	30.39	0.7843
					Potri.007G014501 [exp]	42.98	0.7843
AT5G12000			Protein kinase protein with ad...		Potri.001G198300 [exp]	47.48	0.6304
AT3G07820			Pectin lyase-like superfamily ...		Potri.019G067100 [exp]	50.40	0.7843
AT3G07820			Pectin lyase-like superfamily ...		Potri.019G067133 [exp]	52.64	0.7843
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Potri.003G109700 [exp]	56.14	0.6375	KUP10.2
AT1G68620			alpha/beta-Hydrolases superfam...		Potri.008G118400 [exp]	56.99	0.7836
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Potri.006G101200 [exp]	58.99	0.7834

Compare expression of checked genes

Potri.019G067200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.