Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33440 734 / 0 Major facilitator superfamily protein (.1) AT1G59740 726 / 0 Major facilitator superfamily protein (.1) AT1G69850 362 / 1e-117 NTL1, ATNRT1:2 nitrate transporter 1:2 (.1) AT1G27040 340 / 2e-109 Major facilitator superfamily protein (.1.2) AT5G01180 324 / 2e-103 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT3G54140 324 / 2e-103 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT3G21670 312 / 2e-98 Major facilitator superfamily protein (.1) AT2G02040 301 / 2e-94 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 297 / 8e-93 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT2G26690 294 / 8e-92 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G229000 [exp] 791 / 0 AT1G59740 808 / 0.0 Major facilitator superfamily protein (.1) Potri.003G000800 [exp] 789 / 0 AT1G59740 821 / 0.0 Major facilitator superfamily protein (.1) Potri.004G064100 [exp] 407 / 4e-135 AT1G59740 417 / 2e-139 Major facilitator superfamily protein (.1) Potri.002G129500 [exp] 380 / 8e-125 AT1G27040 456 / 5e-155 Major facilitator superfamily protein (.1.2) Potri.014G036200 [exp] 365 / 7e-119 AT1G27040 428 / 6e-144 Major facilitator superfamily protein (.1.2) Potri.010G034300 [exp] 352 / 6e-114 AT1G69850 781 / 0.0 nitrate transporter 1:2 (.1) Potri.014G157500 [exp] 332 / 4e-106 AT3G21670 772 / 0.0 Major facilitator superfamily protein (.1) Potri.003G111500 [exp] 327 / 4e-104 AT1G12110 721 / 0.0 CHLORINA 1, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1, nitrate transporter 1.1 (.1) Potri.016G111900 [exp] 322 / 1e-102 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007437 [exp] 719 / 0 AT1G59740 842 / 0.0 Major facilitator superfamily protein (.1) Lus10024457 [exp] 714 / 0 AT1G59740 835 / 0.0 Major facilitator superfamily protein (.1) Lus10015240 [exp] 375 / 2e-122 AT1G69850 469 / 1e-159 nitrate transporter 1:2 (.1) Lus10013276 [exp] 357 / 5e-116 AT1G69850 780 / 0.0 nitrate transporter 1:2 (.1) Lus10030799 [exp] 356 / 2e-115 AT1G69850 771 / 0.0 nitrate transporter 1:2 (.1) Lus10005417 [exp] 353 / 4e-114 AT1G69850 446 / 1e-150 nitrate transporter 1:2 (.1) Lus10033101 [exp] 348 / 1e-112 AT5G62730 748 / 0.0 Major facilitator superfamily protein (.1) Lus10037217 [exp] 345 / 3e-111 AT1G69850 813 / 0.0 nitrate transporter 1:2 (.1) Lus10036710 [exp] 342 / 5e-110 AT1G69850 822 / 0.0 nitrate transporter 1:2 (.1) Lus10032876 [exp] 333 / 2e-106 AT1G27040 445 / 1e-150 Major facilitator superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.019G067500.1 pacid=42773327 polypeptide=Potri.019G067500.1.p locus=Potri.019G067500 ID=Potri.019G067500.1.v4.1 annot-version=v4.1 ATGGATAATAGTGTGGAGAAGACAAGAATGAAGTTTAAACAAGATTCTTTGTCTGGTGCTGTGGAGGAGACGTCTGTTGATTGGAGAGGCAGAATCTGCA AGTCTAAGCATGGTGGAATGGCTGCCGCTGTTTTCGTTCTTGGGCTTCAGGCTTTTGAGATGATGGGAATTGCTGCTGTTGGGAACAATCTCATTACATA TGTGTTCAATGACATGCACTTTCCTTTGTCAAAGTCCGCGAACATAGTCACGAACTTCGTAGGAACTGTCTTCCTCCTATCCCTCCTTGGTGGGTTCCTC TCAGATTCTTACCTTGGGAGCTTTTGGACCATGCTGATCTTTGGGTTTGTGGAGCTCTCTGGTTTCATATTATTGTCCGTTCAAGCCCATCTCCCGCAGT TGAGGCCACCTAGCTGTGATATGGTATCTGATGGAGTTGACTGTGTGGAAGCCAAGGGCTACAAGGCTTTGATATTCTTTTTGGCGCTCTACTTGGTGGC TCTAGGAAGTGGATGTCTAAAACCAAACATAATTTCTCACGGGGCAGACCAGTTCAAGAAGGAAGACCCCAAGCAATCCAAGAAGCTCTCCACCTACTTC AATGTAGCCTATTTTGCTTTCTGCATTGGAGAGCTTATTGCCCTAACAGTTCTTGTTTGGGTCCAAACCCATTCAGGAATGGATGTTGGTTTTGGAGTCT CTGCTGCTGCCATGGCTGTAGGATTGATTTGCTTGATTTCAGGTTCATTTTCGTACAGGAACAAGCCTCCTAAAGGAAGTATCTTCACTCCATTTGCTCA GGTTTTTGTTGCTGCAATAACAAAAAGAAAGCAAATCTGTCCCTCGAACGCACAGATGCTTCATGGCTGCCACAACAATGTGTCAAGCCACGTCCCAGCA ACGTCAACTGATGCCAGCAACTTGCTTCATACTGAAAAGTTCAGGTTCCTGGATAAGGCCTGTATCAGAGTCCAAGATGGAAGTGAGGCAAGTGAGAGTA CCTGGAGATTATGCACAGTGGCCCAAGTGGAGCAAGTGAAGATACTTATCTCAGTCATTCCCATATTTTCCTGCACTATAATTTTCAACACTATTTTAGC ACAGCTTCAAACTTTCTCTGTTCAACAAGGAAGTGCTATGAACACACGGATCACAAAAAGCTTCAAAATCCCTCCAGCTTCACTTCAATCCATCCCTTAC ATCATGCTTATCTTTGTTGTCCCTCTCTATGAAACTGCCTTTGTACCATTTGCTAGGAGAATCACCGGGAAAGATTCTGGAATCACTCCTCTGCAAAGGG TTGGCGTTGGACTCTTTATCGCAACATTTTCAATGGTTTCAGCTGCAGTAATTGAAAGGAAGAGAAGAACCTCAGCTCTGGATTATCAGGAAACGTTGTC CATATTTTGGATTGCTCCCCAATTTCTCATTTTTGGTCTCTCAGAGATGTTCACTGCAGTGGGTCTTATAGAGTTCTTCTACAAACAGTCCTTGGAAGGG ATGCAGTCCTTTCTAACTGCCATGACTTATTGCTCATACTCATTTGGCTTCTACCTGAGCTCCCTCCTTGTTTCTCTAGTGAACAAAATTACCTCTAGCT CTTCTAGTGGTGGCTGGCTTAGTGACAATGACCTAAACAAAGACAAGCTAGACCTTTTCTATTGGTTACTAGCTGTCCTAAGTCTCATCAACTTCTTTAA TTATCTTTTTTGGTCAAAATGGTATTCTTACAATCCATCTCTATCACATGATCACTCTCTTGGACAAGACATAGAGAGCCAAAACTTCAACTCTTCTAAG CGTGTTGGACCTGAAAATACTATATCTTGA
AA sequence Show only first row Show all	>Potri.019G067500.1 pacid=42773327 polypeptide=Potri.019G067500.1.p locus=Potri.019G067500 ID=Potri.019G067500.1.v4.1 annot-version=v4.1 MDNSVEKTRMKFKQDSLSGAVEETSVDWRGRICKSKHGGMAAAVFVLGLQAFEMMGIAAVGNNLITYVFNDMHFPLSKSANIVTNFVGTVFLLSLLGGFL SDSYLGSFWTMLIFGFVELSGFILLSVQAHLPQLRPPSCDMVSDGVDCVEAKGYKALIFFLALYLVALGSGCLKPNIISHGADQFKKEDPKQSKKLSTYF NVAYFAFCIGELIALTVLVWVQTHSGMDVGFGVSAAAMAVGLICLISGSFSYRNKPPKGSIFTPFAQVFVAAITKRKQICPSNAQMLHGCHNNVSSHVPA TSTDASNLLHTEKFRFLDKACIRVQDGSEASESTWRLCTVAQVEQVKILISVIPIFSCTIIFNTILAQLQTFSVQQGSAMNTRITKSFKIPPASLQSIPY IMLIFVVPLYETAFVPFARRITGKDSGITPLQRVGVGLFIATFSMVSAAVIERKRRTSALDYQETLSIFWIAPQFLIFGLSEMFTAVGLIEFFYKQSLEG MQSFLTAMTYCSYSFGFYLSSLLVSLVNKITSSSSSGGWLSDNDLNKDKLDLFYWLLAVLSLINFFNYLFWSKWYSYNPSLSHDHSLGQDIESQNFNSSK RVGPENTIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G33440			Major facilitator superfamily ...		Potri.019G067500 [exp]	0	1
AT5G14940			Major facilitator superfamily ...		Potri.017G152800 [exp]	1.00	0.8806
AT1G59740			Major facilitator superfamily ...		Potri.003G000800 [exp]	1.41	0.8220
AT1G56220			Dormancy/auxin associated fami...		Potri.005G024250 [exp]	4.47	0.7596
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Potri.005G111700 [exp]	4.89	0.8194	ATHK1.3
AT1G02860		BAH1, NLA	nitrogen limitation adaptation...		Potri.014G130300 [exp]	5.09	0.7717
AT3G15990		SULTR3;4	sulfate transporter 3;4 (.1)		Potri.003G056200 [exp]	6.70	0.7795	SULTR3.6
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Potri.007G056400 [exp]	7.48	0.8015	Pt-ATHK1.2
AT3G11410		ATPP2CA, AHG3	ARABIDOPSIS THALIANA PROTEIN P...		Potri.010G199600 [exp]	7.54	0.7117
AT1G71960		ATABCG25, ABCG2...	Arabidopsis thaliana ATP-bindi...		Potri.013G111900 [exp]	9.89	0.7714
					Potri.018G100300 [exp]	10.95	0.7917

Compare expression of checked genes

Potri.019G067500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.