Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16370 799 / 0 AAE5 acyl activating enzyme 5 (.1) AT5G16340 792 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G75960 744 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G21530 722 / 0 AMP-dependent synthetase and ligase family protein (.1.2) AT1G21540 722 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G77240 702 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G20560 544 / 0 AAE1 acyl activating enzyme 1 (.1.2) AT3G16910 536 / 0 AAE7, ACN1 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) AT2G17650 530 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G66120 528 / 0 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068001 [exp] 902 / 0 AT5G16340 775 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.019G067900 [exp] 896 / 0 AT5G16340 777 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.019G068100 [exp] 896 / 0 AT5G16340 778 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.013G096200 [exp] 888 / 0 AT5G16340 779 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G000300 [exp] 821 / 0 AT5G16340 756 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.015G148500 [exp] 818 / 0 AT5G16370 760 / 0.0 acyl activating enzyme 5 (.1) Potri.005G099500 [exp] 577 / 0 AT2G17650 800 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.005G250700 [exp] 565 / 0 AT1G20560 790 / 0.0 acyl activating enzyme 1 (.1.2) Potri.004G082000 [exp] 560 / 0 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039161 [exp] 867 / 0 AT5G16370 781 / 0.0 acyl activating enzyme 5 (.1) Lus10028375 [exp] 582 / 0 AT2G17650 793 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10007369 [exp] 555 / 0 AT1G65890 724 / 0.0 acyl activating enzyme 12 (.1) Lus10016870 [exp] 552 / 0 AT3G16910 918 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10037735 [exp] 552 / 0 AT3G16910 909 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10016011 [exp] 545 / 0 AT1G20560 846 / 0.0 acyl activating enzyme 1 (.1.2) Lus10016869 [exp] 544 / 0 AT3G16910 902 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10037734 [exp] 542 / 0 AT3G16910 897 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10020787 [exp] 539 / 0 AT1G65890 727 / 0.0 acyl activating enzyme 12 (.1) Lus10010956 [exp] 523 / 0 AT1G65890 696 / 0.0 acyl activating enzyme 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme CL0531 [poplar] [flax] AMP-binding_C PF13193 [poplar] [flax] AMP-binding_C AMP-binding enzyme C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.019G067800.1 pacid=42774718 polypeptide=Potri.019G067800.1.p locus=Potri.019G067800 ID=Potri.019G067800.1.v4.1 annot-version=v4.1 ATGGAGGAACTGAAGCCAACACCAGCAAGCTTATCTCCTCTCACACCATTAGCTTTCTTGGAAAGAACTGCTACTGTATATGGTGATTGCCCATCTGTCA TCTACAACAACAGTACTTATACGTGGTCTCAAACCCACCGTCGATGTCTCCAAGTGGCATCATCTCTGTCATCGTACGGCATCAAGCCTGGCCACGTGGT CTCCGTTGTCGCCCCCAACATCCCTGCTATGTACGAGCTTCAGTTTGCCGTGCCCATGTCTGGTGCCATCCTCAACAACATCAACACACGCCTAGATGCA CGTACTATGTCCATACTCCTGCGTCACAGCGAATCAAAGCTCGTTTTCGTTGATTGCCTCTCACGTGACGTCATCCTGGACGCCATGTCTTTGCTACCTC CGAATACCAAGCGCCCTCCTCTCGTCCTCATCGCGGATGATGCTGAGGCAGCAGAATCATCTATAACCGATGATTTTTGCTGCGCTTATGAAAGCATGGT GGAGAAAGGTGATCCTGGGTTCAAGTGGGTCCAGCCTCATAGTGAGTGGGACCCGATGGTGCTAAACTACACGTCAGGTACAACATCATCTCCTAAAGGA GTAGTCCATTGCCATAGAAGTGTTTTCACCATCACTGTTGGATCCTTGATTGATTGGGGAGTTCCAAAACAACCCGTATATTTGTGGACCCTACCGATAT TCCACGCCAACGGATGGAGCTATCCTTGGGGCATAGCAGCCGTTGGTGGGACCAACATCTGTCTCCGTAAATTTGATGGTCCGACGATCTACAGCTTGAT CAAACGACACGGTGTCACTCACATGTGTGGTGCTCCTGTGGTGTTGACCATGCTAACAAACTCTACAAATAAAGAACCACTTAGAAACCCAATTCAGATT TTAACCGCCGGAGCCCCACCACCATCCGCCGTGCTATTCAGGACAGAGTCATTGGGTTTTGTAGTGAGTCATGGATACGGGTTAACTGAAACAGCAGGGC TTGTGGTGTCTTGTGCATGGAAACCAAAGTGGAATACATTTCCACCAAGCGAAAGAGCTAGACTCAAGGCAAGACAAGGAGTTAAGATTGTTGGGTTCAC TGAGATCGATGTTTTGGAACCCGAATCAGGAAAGAGTGTGAAACGAGACGGGGTAGCACTCGGTGAAGTTGTTTTAAAAGGTGGGTGTATTATGCTGGGT TATTTAAAAGACCCAACCGGCACATCAAAGTGCATGAAAGATGGCTGGTTTTACACCGGAGATGTGGGTGTTATGCACCAAGATGGTTATTTAGAAATCA AAGATAGGTCCAAAGATGTGATCATCAGCGGTGGAGAGAATATTAGCAGTGTAGAGATTGAGTCTGTGCTGTATACACATCCTGCTGTTAACGAGGCGGC TGTGGTGGCTCGACCTGATGAGTTCTGGGGTGAGACACCATGCGCATTCGTGGGTTTGAAGGATGGGTTGACTCAAAAGCCTGGTGAGAAGGATATAATT GATTTTTGCAGGGAAAAAATGCCACACTATATGGTGCCTAAAACTGTGGTCTTTAAAGATGAGCTTCCCAAGACATCAACTGGGAAGATTCAAAAGTTTG TGCTAAGAGGGATTGCTAAGGGCATGGGGTCCTCAAAAGGGAGTCGAATGTAG
AA sequence Show only first row Show all	>Potri.019G067800.1 pacid=42774718 polypeptide=Potri.019G067800.1.p locus=Potri.019G067800 ID=Potri.019G067800.1.v4.1 annot-version=v4.1 MEELKPTPASLSPLTPLAFLERTATVYGDCPSVIYNNSTYTWSQTHRRCLQVASSLSSYGIKPGHVVSVVAPNIPAMYELQFAVPMSGAILNNINTRLDA RTMSILLRHSESKLVFVDCLSRDVILDAMSLLPPNTKRPPLVLIADDAEAAESSITDDFCCAYESMVEKGDPGFKWVQPHSEWDPMVLNYTSGTTSSPKG VVHCHRSVFTITVGSLIDWGVPKQPVYLWTLPIFHANGWSYPWGIAAVGGTNICLRKFDGPTIYSLIKRHGVTHMCGAPVVLTMLTNSTNKEPLRNPIQI LTAGAPPPSAVLFRTESLGFVVSHGYGLTETAGLVVSCAWKPKWNTFPPSERARLKARQGVKIVGFTEIDVLEPESGKSVKRDGVALGEVVLKGGCIMLG YLKDPTGTSKCMKDGWFYTGDVGVMHQDGYLEIKDRSKDVIISGGENISSVEIESVLYTHPAVNEAAVVARPDEFWGETPCAFVGLKDGLTQKPGEKDII DFCREKMPHYMVPKTVVFKDELPKTSTGKIQKFVLRGIAKGMGSSKGSRM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16370		AAE5	acyl activating enzyme 5 (.1)		Potri.019G067800 [exp]	0	1
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Potri.009G159800 [exp]	2.00	0.9575
AT5G05710			Pleckstrin homology (PH) domai...		Potri.010G190500 [exp]	2.23	0.9572
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Potri.007G079600 [exp]	2.64	0.9639
AT1G53920		GLIP5	GDSL-motif lipase 5 (.1)		Potri.018G063901 [exp]	3.46	0.9591
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.001G389200 [exp]	6.00	0.9492
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Potri.002G028700 [exp]	7.41	0.9433	VFCYSPRO.1
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.019G057901 [exp]	10.48	0.9435
AT5G27280			Zim17-type zinc finger protein...		Potri.005G246200 [exp]	11.53	0.9480
AT4G20030			RNA-binding (RRM/RBD/RNP motif...		Potri.003G074900 [exp]	12.48	0.9404
AT3G23360			Protein phosphatase 2C family ...		Potri.010G070100 [exp]	13.41	0.9294

Compare expression of checked genes

Potri.019G067800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.