Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16340 777 / 0 AMP-dependent synthetase and ligase family protein (.1) AT5G16370 773 / 0 AAE5 acyl activating enzyme 5 (.1) AT1G21530 733 / 0 AMP-dependent synthetase and ligase family protein (.1.2) AT1G75960 733 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G21540 732 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G77240 704 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G20560 565 / 0 AAE1 acyl activating enzyme 1 (.1.2) AT2G17650 541 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G66120 534 / 0 AMP-dependent synthetase and ligase family protein (.1) AT3G16910 531 / 0 AAE7, ACN1 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068001 [exp] 1264 / 0 AT5G16340 775 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.019G068100 [exp] 1230 / 0 AT5G16340 778 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.019G067800 [exp] 917 / 0 AT5G16370 799 / 0.0 acyl activating enzyme 5 (.1) Potri.013G096200 [exp] 872 / 0 AT5G16340 779 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.015G148500 [exp] 785 / 0 AT5G16370 760 / 0.0 acyl activating enzyme 5 (.1) Potri.004G000300 [exp] 785 / 0 AT5G16340 756 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G082000 [exp] 578 / 0 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.017G138350 [exp] 575 / 0 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.016G034800 [exp] 573 / 0 AT1G66120 692 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039161 [exp] 846 / 0 AT5G16370 781 / 0.0 acyl activating enzyme 5 (.1) Lus10007369 [exp] 569 / 0 AT1G65890 724 / 0.0 acyl activating enzyme 12 (.1) Lus10028375 [exp] 566 / 0 AT2G17650 793 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016011 [exp] 559 / 0 AT1G20560 846 / 0.0 acyl activating enzyme 1 (.1.2) Lus10020787 [exp] 555 / 0 AT1G65890 727 / 0.0 acyl activating enzyme 12 (.1) Lus10016870 [exp] 543 / 0 AT3G16910 918 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10037735 [exp] 543 / 0 AT3G16910 909 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10010956 [exp] 542 / 0 AT1G65890 696 / 0.0 acyl activating enzyme 12 (.1) Lus10016869 [exp] 538 / 0 AT3G16910 902 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10037734 [exp] 537 / 0 AT3G16910 897 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme CL0531 [poplar] [flax] AMP-binding_C PF13193 [poplar] [flax] AMP-binding_C AMP-binding enzyme C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.019G067900.1 pacid=42773812 polypeptide=Potri.019G067900.1.p locus=Potri.019G067900 ID=Potri.019G067900.1.v4.1 annot-version=v4.1 ATGGAAGAACTAAAGCCAATGCCACCAAGCTCATGCCCCTTTACACCGATAGGCTTCCTGGAAAGAGCTGCCACTGTTTATGGTGATTGCCCATCCGTCA TCTACAACACCACCACTTACACGTGGTCTCAAACCTACCGTCGATGTCTCAAGGTTGCATCTTCGCTATCATCCAATGGCATCAAGCCAGGTCAAGTGGT TTCCGTTGTGGCCCCTAACGTTCCTGCCATGTATGAGCTTCAATTTGCCGTGCCCATGTCTGGTGCCATCCTCAACAACATCAACACCCGTCTTGACGCT CGGACCATTTCCATACTCCTGCGTCACAGTGAGTCAAAGCTCGTCTTCGTTGATTATTTGTCCCTTGATGTTATTCTTGAAGCCCTCTCTTTGTTTCCAC CTGAGACTCCATGCCCTGCCCTCGTCCTCATTACGGACGAGGAGGAAGAAGCACCGCCACCACCATCACTATCCGTAGACTTTTGTACTTATGAAAGCAT GGTGGAGAAAGGAGATCCTGAGTTCAAGTGGGTCCAGCCACAAAGTGAGTGGGACCCGGTGGTTTTAAACTACACATCTGGTACTACCTCAGCTCCTAAA GGTGTGGTACAAACCCACAGAGCAACTTTCATCATAACCATTGGATCCTTGATTGATTGGAGCCTACCAAAACAAGCAGTGTATCTGTGGACCCTGCCTA TATTTCACGCCAATGGGTGGAGTTATGCATGGGGTATGGCAGCTCTTGGCGGGACCAACATCTGTCTTCGTAGAGTGGAAGCCCCTACGATCTACAGCTT GATCAAAAGGCACGGGGTCACTCACATGTGTGGCGCACCTGTGGTGCTAAACATGCTAACAAACTCTCCCAACGCGGAACGCCTACAAAACCCAGTGCAA ATTTTAACCGGGGGAGCTCCACCTCCATCCGCCGTGCTGTTCCGGGCAGAGTCACTTGGTTTTGTGGTGAGTCATGGATACGGTTTAACTGAAACAGCAG GGCTGGTCACTTCGTGTGCGTGGAAACCAAAGTGGAATACATTTCCAGCAAGTGAGAGAGCAATACTAAAGTCAAGACAAGGAGTTCCGATTGTTGGCTT CACCGAGATGGGCGTTGTGGATCCCAATACAGGAAAGAGTGTGGAAAGAGATGGGGTATCACTTGGTGAAGTTGTTTTGAGAGGTGGGAGTGTAATGTTA GGTTACTTTAAAGATCCATTAGGCACGTCGATGTGCATGAAAGATGGTTGGTTTTACACGGGCGACGTGGGTGTTGTGCACTCAGATGGATATTTAGAGG TCAAAGATAGGTCCAAAGACGTGATCATTAGTGGTGGAGAGAATATTAGCAGCGTAGAGATCGAGTCTGTGTTGTATACACATCCTGCTGTTAACGAGGC AGCTGTGGTGGCTAGGCCTGATGAGTTTTGGGGCGAGACACCGTGCGCGTTTGTGAGTTTGAAAAATGGTTTGCCTCACAAACCTGGTGAGAAAGATATA ATTGATTATTGCAGGGAAAAGATGGCGCATTATATGGTACCAAAAATCGTGGTGTTCAAAGATGAGCTTCCAAAGACATCAACTGGGAAGATTCAGAAGT ATTTGCTCAGAGAATATGCCAAGGTCGTGGATTCTTCGAAGGTAAAAATGGCAACCGGACAGGTCGGGAGTGGTTTTTATCTGCCTCTACGTTCTCCTCG ATGGCTTCAAACACCCTTTATTCCCGCTCCCATCTCCACCTCCATTTGCGTTCCCATTCCCCGTTGTCGTCCCGTCTCTCTGTACAACTTCAGTCAAAGC ACATTTTTAGCCAAAACAAGAGGTTCTGAAATATTCAGTATCTTTCAAAAGAACCAAGGAACAGTGCTCCATCAGCCACATCGTTTGGGCAACACTCATG CTCGATTCCTCTGA
AA sequence Show only first row Show all	>Potri.019G067900.1 pacid=42773812 polypeptide=Potri.019G067900.1.p locus=Potri.019G067900 ID=Potri.019G067900.1.v4.1 annot-version=v4.1 MEELKPMPPSSCPFTPIGFLERAATVYGDCPSVIYNTTTYTWSQTYRRCLKVASSLSSNGIKPGQVVSVVAPNVPAMYELQFAVPMSGAILNNINTRLDA RTISILLRHSESKLVFVDYLSLDVILEALSLFPPETPCPALVLITDEEEEAPPPPSLSVDFCTYESMVEKGDPEFKWVQPQSEWDPVVLNYTSGTTSAPK GVVQTHRATFIITIGSLIDWSLPKQAVYLWTLPIFHANGWSYAWGMAALGGTNICLRRVEAPTIYSLIKRHGVTHMCGAPVVLNMLTNSPNAERLQNPVQ ILTGGAPPPSAVLFRAESLGFVVSHGYGLTETAGLVTSCAWKPKWNTFPASERAILKSRQGVPIVGFTEMGVVDPNTGKSVERDGVSLGEVVLRGGSVML GYFKDPLGTSMCMKDGWFYTGDVGVVHSDGYLEVKDRSKDVIISGGENISSVEIESVLYTHPAVNEAAVVARPDEFWGETPCAFVSLKNGLPHKPGEKDI IDYCREKMAHYMVPKIVVFKDELPKTSTGKIQKYLLREYAKVVDSSKVKMATGQVGSGFYLPLRSPRWLQTPFIPAPISTSICVPIPRCRPVSLYNFSQS TFLAKTRGSEIFSIFQKNQGTVLHQPHRLGNTHARFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16340			AMP-dependent synthetase and l...		Potri.019G067900 [exp]	0	1
AT1G19670		CORI1, ATHCOR1,...	CORONATINE-INDUCED PROTEIN 1, ...		Potri.005G214200 [exp]	1.00	0.9510
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.014G080100 [exp]	2.82	0.9120
AT3G47800			Galactose mutarotase-like supe...		Potri.017G080200 [exp]	5.00	0.9003
					Potri.011G125551 [exp]	8.48	0.9403
					Potri.014G151950 [exp]	22.18	0.9230
AT1G68320	MYB	BW62C, BW62B, A...	myb domain protein 62 (.1)		Potri.010G123000 [exp]	31.55	0.7507
AT4G38040			Exostosin family protein (.1)		Potri.007G116800 [exp]	39.24	0.8892
					Potri.007G116750 [exp]	43.35	0.8800
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.007G084200 [exp]	50.28	0.8561
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.003G176700 [exp]	52.82	0.8560	CHS.3

Compare expression of checked genes

Potri.019G067900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.