Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16340 775 / 0 AMP-dependent synthetase and ligase family protein (.1) AT5G16370 775 / 0 AAE5 acyl activating enzyme 5 (.1) AT1G75960 734 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G21530 723 / 0 AMP-dependent synthetase and ligase family protein (.1.2) AT1G21540 722 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G77240 699 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G20560 560 / 0 AAE1 acyl activating enzyme 1 (.1.2) AT2G17650 538 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G66120 531 / 0 AMP-dependent synthetase and ligase family protein (.1) AT3G16910 529 / 0 AAE7, ACN1 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G067900 [exp] 1254 / 0 AT5G16340 777 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.019G068100 [exp] 1226 / 0 AT5G16340 778 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.019G067800 [exp] 909 / 0 AT5G16370 799 / 0.0 acyl activating enzyme 5 (.1) Potri.013G096200 [exp] 869 / 0 AT5G16340 779 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.015G148500 [exp] 787 / 0 AT5G16370 760 / 0.0 acyl activating enzyme 5 (.1) Potri.004G000300 [exp] 781 / 0 AT5G16340 756 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G082000 [exp] 573 / 0 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.017G138350 [exp] 571 / 0 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.006G036300 [exp] 568 / 0 AT1G66120 687 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039161 [exp] 845 / 0 AT5G16370 781 / 0.0 acyl activating enzyme 5 (.1) Lus10007369 [exp] 563 / 0 AT1G65890 724 / 0.0 acyl activating enzyme 12 (.1) Lus10028375 [exp] 561 / 0 AT2G17650 793 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016011 [exp] 553 / 0 AT1G20560 846 / 0.0 acyl activating enzyme 1 (.1.2) Lus10020787 [exp] 551 / 0 AT1G65890 727 / 0.0 acyl activating enzyme 12 (.1) Lus10016870 [exp] 542 / 0 AT3G16910 918 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10037735 [exp] 540 / 0 AT3G16910 909 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10010956 [exp] 538 / 0 AT1G65890 696 / 0.0 acyl activating enzyme 12 (.1) Lus10016869 [exp] 538 / 0 AT3G16910 902 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10037734 [exp] 537 / 0 AT3G16910 897 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme CL0531 [poplar] [flax] AMP-binding_C PF13193 [poplar] [flax] AMP-binding_C AMP-binding enzyme C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.019G068001.2 pacid=42773725 polypeptide=Potri.019G068001.2.p locus=Potri.019G068001 ID=Potri.019G068001.2.v4.1 annot-version=v4.1 ATGGAAGAACTAAAGCCAATGCCACCAAGCTCATGCCCCTTTACACCCATAGGCTTCCTGGAAAGAGCTGCCACTGTTTATGGTGATTGCCCATCCGTCA TCTACAACAGCACCACTTACACGTGGTCTCAAACCTACCGTCGATGTCTCAAGGTTGCATCTTCGCTATCATCCAATGTCATCAAGCCAGGTCAAGTGGT TTCCGTTGTGGCCCCTAACGTTCCTGCCATGTATGAGCTTCAATTTGCCGTGCCCATGTCTGGTGCCATCCTCAACAACATCAACACCCGTCTTGACGCT CGGACCATTTCCATACTCCTGCGTCACAGTGAGTCAAAGCTCGTCTTCGTTGATTATTTGTCGCTTCGTGTTATTCTTGAAGCCCTCTCTTTGTTTCCAC CTGAGACTCCATGCCCTGCCCTCGTCCTCATTACGGATGATGAGGAAGAAGTACCGCCACCACCATCACTTTCCGAAGACTTTTGTACTTACGAAAGCAT GGTGGAGAAAGGAGATCCTGAGTTCAAGTGGGTCCAGCCACAAAGTGAGTGGGACCCGGTGGTTTTAAACTACACATCTGGTACTACCTCAGCTCCTAAA GGTGTGGTACAATCCCACAGAGGAACTTTCACCATAACCATTGGATCCTTGATTGATTGGAGCCTACCAAAACAAGCAGTGTATCTGTGGACCCTGCCGA TATTTCACGCCAATGGGTGGAGTTATCCATGGGGTATGGCAGCTGTTGGCGGGACCAACATCTGTCTTCGTAGAGTGGAAGCCCCTACGATCTACAGCTT GATCAAAAGGCACGGGGTCACTCACATGTGTGGCGCACCTGTGGTGCTAAACATGCTAACAAACTCTCCCAACGCGGAACGCCTACAAAACCCAGTGCAA ATTTTAACCGCGGGAGCTCCACCTCCATCCGCCGTGCTGTTCCGGGCAGAGTCACTTGGTTTTGTGGTGAGTCATGGATACGGTTTAACTGAAACAGCAG GGCTGGTCACTTCGTGTGCGTGGAAACCAAAGTGGAATACATTTCCAGCAAGTGAGAGAGCAATACTAAAGTCAAGACAAGGAGTTCCGATTGTTGGCTT CACCGAGATGGGCGTTGTGGATCCCAATACAGGAAAGAGTGTGGAAAGAGATGGGGTATCACTTGGTGAAGTTGTTTTGAGAGGTGGGAGCGTAATGTTA GGTTACTTTAAAGATCCATTAGGCACGTCGATGTGCATGAAAGATGGTTGGTTCTACACGGGCGATGTGGGTGTTGTGCACTCAGATGGATATTTAGAGG TCAAAGATAGGTCCAAAGACGTGATCATTAGCGGTGGAGAGAATATTAGCAGCGTAGAGATCGAGTCTGTGTTGTATACACATCCTGCTGTTAACGAGGC AGCTGTGGTGGCTAGGCCTGATGAGTTCTGGGGCGAGACACCGTGCGCGTTTGTGAGTTTGAAAAATGGTTTGCCTCACAAACCTGGTGAGAAAGATATA ATTGATTATTGCAGGGAAAAGATGGCGCATTATATGGTACCAAAAATCGTGGTGTTCAAAGATGAGCTTCCAAAGACATCAACTGGGAAGATTCAGAAGT ATTTGCTCAGAGAATATGCCAAGGTCGTGGATTCTTCGAAGGTAAAAATGGCAACCGGACAGGTCGGGAGTGGTTTTTATCTGCCTCTACGTTCTCCTCG ATGGCTTCAAACACCCTTTATTCCCACTCCCATCTCCACCTCCATTTGCGTTCCCATTCCCCGTTGTCGTCCCGTCTCTCTGTACAACTTCAGTCAAAGC ATATTTTTTGCCAAAAAAAGAGGTTCTGAAATATTCAGTATCTTTCAAAAGAACCAAGGAACAGTGCTCCATCAGCCACATCGTTTGGGCAACACTCATG CTCGATTCCTCTGA
AA sequence Show only first row Show all	>Potri.019G068001.2 pacid=42773725 polypeptide=Potri.019G068001.2.p locus=Potri.019G068001 ID=Potri.019G068001.2.v4.1 annot-version=v4.1 MEELKPMPPSSCPFTPIGFLERAATVYGDCPSVIYNSTTYTWSQTYRRCLKVASSLSSNVIKPGQVVSVVAPNVPAMYELQFAVPMSGAILNNINTRLDA RTISILLRHSESKLVFVDYLSLRVILEALSLFPPETPCPALVLITDDEEEVPPPPSLSEDFCTYESMVEKGDPEFKWVQPQSEWDPVVLNYTSGTTSAPK GVVQSHRGTFTITIGSLIDWSLPKQAVYLWTLPIFHANGWSYPWGMAAVGGTNICLRRVEAPTIYSLIKRHGVTHMCGAPVVLNMLTNSPNAERLQNPVQ ILTAGAPPPSAVLFRAESLGFVVSHGYGLTETAGLVTSCAWKPKWNTFPASERAILKSRQGVPIVGFTEMGVVDPNTGKSVERDGVSLGEVVLRGGSVML GYFKDPLGTSMCMKDGWFYTGDVGVVHSDGYLEVKDRSKDVIISGGENISSVEIESVLYTHPAVNEAAVVARPDEFWGETPCAFVSLKNGLPHKPGEKDI IDYCREKMAHYMVPKIVVFKDELPKTSTGKIQKYLLREYAKVVDSSKVKMATGQVGSGFYLPLRSPRWLQTPFIPTPISTSICVPIPRCRPVSLYNFSQS IFFAKKRGSEIFSIFQKNQGTVLHQPHRLGNTHARFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16340			AMP-dependent synthetase and l...		Potri.019G068001 [exp]	0	1
AT1G10670		ACLA-1	ATP-citrate lyase A-1 (.1.2.3....		Potri.010G042700 [exp]	1.00	0.9353
AT3G47800			Galactose mutarotase-like supe...		Potri.017G080200 [exp]	4.24	0.9086
					Potri.007G060500 [exp]	17.23	0.9001
AT5G59910		HTB4	Histone superfamily protein (....		Potri.008G030600 [exp]	20.00	0.9010
AT1G16260			Wall-associated kinase family ...		Potri.001G040628 [exp]	21.86	0.9302
AT5G24090		ATCHIA	chitinase A (.1)		Potri.015G023900 [exp]	23.47	0.8910	CHI3.7
AT1G61720		BAN	BANYULS, NAD(P)-binding Rossma...		Potri.011G031700 [exp]	23.49	0.9039	ANR/BAN2,Pt-BAN.1
AT4G34120		CBSX2, CDCP1, L...	LOSS OF THE TIMING OF ET AND J...		Potri.001G303900 [exp]	27.27	0.9184
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.014G080100 [exp]	30.39	0.8634
AT2G42990			GDSL-like Lipase/Acylhydrolase...		Potri.005G205100 [exp]	49.11	0.9039

Compare expression of checked genes

Potri.019G068001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.