Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 579 / 0 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G12010 553 / 2e-177 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G08450 528 / 5e-168 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G51630 528 / 6e-168 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT5G18360 518 / 1e-167 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46470 504 / 8e-160 RPS6 RESISTANT TO P. SYRINGAE 6, disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46450 495 / 2e-156 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46260 494 / 3e-155 disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46270 486 / 4e-153 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G49140 481 / 5e-153 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068200 [exp] 1144 / 0 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 1042 / 0 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097100 [exp] 929 / 0 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G097800 [exp] 855 / 0 AT5G17680 512 / 3e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098900 [exp] 843 / 0 AT5G17680 477 / 6e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098500 [exp] 816 / 0 AT5G17680 496 / 4e-157 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 782 / 0 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 771 / 0 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 761 / 0 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026201 [exp] 699 / 0 AT5G17680 511 / 1e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030345 [exp] 696 / 0 AT5G17680 528 / 5e-168 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005588 [exp] 689 / 0 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 639 / 0 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041078 [exp] 572 / 0 AT5G17680 399 / 6e-126 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 559 / 2e-179 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10016029 [exp] 555 / 1e-178 AT4G12010 451 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015350 [exp] 552 / 2e-177 AT4G12010 422 / 2e-127 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10011104 [exp] 511 / 1e-161 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10015648 [exp] 510 / 2e-161 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13191 [poplar] [flax] AAA_16 AAA ATPase domain CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.019G068300.2 pacid=42773110 polypeptide=Potri.019G068300.2.p locus=Potri.019G068300 ID=Potri.019G068300.2.v4.1 annot-version=v4.1 ATGGCTTCCTCCTTTTCTGCTTCAGCTAGCATCCCTGCAAGAAAATATGATGTCTTTATCAGTTTCAGAGGGGAGGACACTCGTGATAATTTTACCAGCC ACCTATATGCTGCTTTGTGTAGAAAAAAAGTCCTGACCTTCGTAGACAACAACCTCAGGAGAGGAGACGAGATTTGTTCATCACTCTTGAAAGCAATTGA AGAATCCAAGCTTTCTGTGATTGTTTTCTCTGAAAACTATGCATCCTCCAAATGGTGCTTGGACGAGCTTGTAAAGATCCTGGAATGCAAGGAAATGAAT GGACAGACGGTTATACCGGTGTTCTACCATGTCAATCCATCTCATGTAAGAAATCAAACTGAAACTGTTGGGGATTCAATCGGTGAACTTGAACTAGTAA CAGAAAAGATGGAAAAGGTGAAGAGATGGAGAGCTGCCTTGAAGGAAGTGGCTACTCTAACTGGGTGGGATTCGCGGAACATTAGATCAGAGTCTGAACT TATTGAGGCGATTGCTGGAGATATCTTGAACAAGTTGTATAAAATGTCTCCTGGTCACTCTATGAATCTGGTTGGAATTGAGGAACACATCAAGAGAACT GAATCTTTGTTGTGCATGGAGTCACAAGAGGTTCGGATCATAGGAATATGGGGAATGGGTGGTATAGGAAAGACCACCATTGCAAGAGCTGTATTTGATC GAATCTGTAATCAATTCGAAGGATTCCACTTTCTTGCAAATGTCAGGGAAAATCTAAGAAGCTATACTGCAGTTGATTTACGAAACAAACTTCTATCTAA AATATTAGATGAAGATAATCTACTTGAGCAGCCTCCAAGTTTGGCAGTTGCTTTTACAAAGGATTGTCTCCGCCGCAAAAAGGTTCTTATTGTCCTGGAT GATGTGGATAACTCGAGGCAATTGCAGGAGTTGTCACTTGGGGTGCATGATTTGTTTGGCCCAGGAAGCAAAATCCTTGTAACAAGCAGGGATAAGCAAG TGCTTATAAAGAATGGAGTTGATGCCATATATAAGGTGCAAGGATTGAACAACCATGACGCCCTTCGACTCCTGAGTTTGAATGCCTTCAAGAAGAACTG TCCCAAGAGGGATCACATAGAGTTGTTAGAGAGGATGGTAGATTATGCAAAAGGTAATCCGTTGGCTCTGATAGTCTTGGGTTCCTCTCTTTATGATAGA AGCAAAGAGAAATGGTACAGTGCATTGAATAAGTTGGGGAAAGTTCCAAACCCTGAAATTCAAAGGGTGTTGAGGATTAGTTACGATGGATTAGATGGGG AACAGCAGCAAATATTTCTTGATATTGCATTCTTTTTCAATGGCGCAGAATGTAACCATGCTGTAAAAGTTTTAGACAGTTGTTATTCCTCTCTGCAGTT TGACTTGAGCATTCTCATTGACAAGTCTCTAATCACCATTTCTCAGAACACACTAGAGATGCATGATATACTACAAGAAATGGCTTATAGCATCGTTCGT GAAGAATCTAAGAATCCTGGAAAACGCAGCAGGTTGTGTGATCATGAAGATATCTATCACGTACTGAAGAAAAAGAAGGGAACTGAAGCAGTTGAAGGCA TTTGTTTGGATATATCTAAAATGCCGGAGATGCACTTGGAATCCGACACATTTGCAAGGATGAATAGTCTCAGGTTTCTTAAATTCTACCATCCCTTTTA CTTCATGGACTCCAAAGACAAAGTGCACCTTCCTCTGAGTGGCCTCAAATATCTCTCTGATGAACTGAAATATCTCCACTGGCATAGATTCCCTGCAAAA TCTCTGCCACAAAATTTTTGTGCCGAAAACATTGTTGACCTTACACTACATTCTAGCAGAGTTGAGCAACTTTGGACGGGGGTACAGGATCTTCTGAATT TAAGATGGATTGACCTCAGTAGGTCGACATATTTGTTAGAAATTCCAGATCTGTCGAGGGCCAAAAATTTGGAGTATATAGATCTTAGTTTCTGTGAGAG TTTGCTTGAGGTGCACTCATCCATTCAACATCTTGAAAAGCTAGAAATCCTCATTCTCAGTGGTTGTAAGAATCTAGGGATTGTTCCAAAAAGGATTGAA TCGAAGTTTCTGAGAATTCTTGATCTATCACATTGCAAAAAGGTCAGAAAATGCCCTGAAATTTCAGGATATTTGGAAGAATTGATGTTACAAGGGACTG CAATAGAAGAACTTCCCCAGTCGATTAGCAAAGTGAAAGAGATAAGAATTCTTGATCTATCAGGCTGCTCAAATATCACCAAGTTTCCCCAGATATCAGG AAATATAAAGCAGTTGAGGTTGCTTTGGACAGTTATAGAAGAGGTTCCCTCATCGATCGAGTTTCTTGCAACTCTCGGTGTATTGGAGATGAATTTCTGT GAACAGCTCTCTAGTCTCCCAACCTGCATCTGTAAATTGAAGTGCCTTGAACGACTTGAGCTAAGCTACTGCCCAAAACTTGAGAGCTTCCCAGAAATCT TGGAGCCAATGGAATCTTTGAAATGTCTTGATTTGAGTGGAACGGCTATTAAAGAGTTGCCCTCATCGATTAAATTTTTAAGCTGCCTTTACATGCTGCA ACTCAATAGATGCGATAACCTTGTCAGCCTTCCAAGTTTCATTGAAAAACTCCCTGTGCTGAAATATCTTAAATTGAATTATTGCAAAAGTCTTCTTTCT CTACCAGAGCTTCCACCGTCAGTAGAATTCTTGGAGGCTGTTGGTTGTGAATCACTGGAAACCTTATCAATCGGCAAAGAAAGCAATTTCTGGTACTTGA ATTTTGCAAATTGCTTCAAATTGGATCAGAAGCCACTCTTGGCAGATACACAAATGAAAATTCAGTCGGGAAAGATGAGACGCGAAGTCACGATTATTTT ACCAGGGAGTGAAATTCCAGGATGGTTCTGTGATCAAAGTATGGGATCTTCGGTAGCCATAAAGTTGCCCACAAATTGCCATCAACACAATGGTTTTGCC TTCGGCATGGTCTTTGTATTCCCAGATCCTCCAACAGAATTGCAATGCAACAGGATATTTATATGTGAATGCCATGCTAGAGGTGAAAATGATGAACATC ATGATGTCATTTTCAATTTGAGTACTTGTGCTTATGAACTCCGATCAGTTGAGTCAGATCAGATGTTACTCTTGTACAATCCCTGCGAGTTCGTAAAACG AGATTGCATCAGCCAATATTCTGGAAAAGAAATTTCATTTGAATTTTACCTGGATGAGCCGTCAGGGCTTCAGAATCGTTGCAAGGTGAAAAGGTGTGGA GTTTACCTCCTGGATGAGTGA
AA sequence Show only first row Show all	>Potri.019G068300.2 pacid=42773110 polypeptide=Potri.019G068300.2.p locus=Potri.019G068300 ID=Potri.019G068300.2.v4.1 annot-version=v4.1 MASSFSASASIPARKYDVFISFRGEDTRDNFTSHLYAALCRKKVLTFVDNNLRRGDEICSSLLKAIEESKLSVIVFSENYASSKWCLDELVKILECKEMN GQTVIPVFYHVNPSHVRNQTETVGDSIGELELVTEKMEKVKRWRAALKEVATLTGWDSRNIRSESELIEAIAGDILNKLYKMSPGHSMNLVGIEEHIKRT ESLLCMESQEVRIIGIWGMGGIGKTTIARAVFDRICNQFEGFHFLANVRENLRSYTAVDLRNKLLSKILDEDNLLEQPPSLAVAFTKDCLRRKKVLIVLD DVDNSRQLQELSLGVHDLFGPGSKILVTSRDKQVLIKNGVDAIYKVQGLNNHDALRLLSLNAFKKNCPKRDHIELLERMVDYAKGNPLALIVLGSSLYDR SKEKWYSALNKLGKVPNPEIQRVLRISYDGLDGEQQQIFLDIAFFFNGAECNHAVKVLDSCYSSLQFDLSILIDKSLITISQNTLEMHDILQEMAYSIVR EESKNPGKRSRLCDHEDIYHVLKKKKGTEAVEGICLDISKMPEMHLESDTFARMNSLRFLKFYHPFYFMDSKDKVHLPLSGLKYLSDELKYLHWHRFPAK SLPQNFCAENIVDLTLHSSRVEQLWTGVQDLLNLRWIDLSRSTYLLEIPDLSRAKNLEYIDLSFCESLLEVHSSIQHLEKLEILILSGCKNLGIVPKRIE SKFLRILDLSHCKKVRKCPEISGYLEELMLQGTAIEELPQSISKVKEIRILDLSGCSNITKFPQISGNIKQLRLLWTVIEEVPSSIEFLATLGVLEMNFC EQLSSLPTCICKLKCLERLELSYCPKLESFPEILEPMESLKCLDLSGTAIKELPSSIKFLSCLYMLQLNRCDNLVSLPSFIEKLPVLKYLKLNYCKSLLS LPELPPSVEFLEAVGCESLETLSIGKESNFWYLNFANCFKLDQKPLLADTQMKIQSGKMRREVTIILPGSEIPGWFCDQSMGSSVAIKLPTNCHQHNGFA FGMVFVFPDPPTELQCNRIFICECHARGENDEHHDVIFNLSTCAYELRSVESDQMLLLYNPCEFVKRDCISQYSGKEISFEFYLDEPSGLQNRCKVKRCG VYLLDE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17680			disease resistance protein (TI...		Potri.019G068300 [exp]	0	1
AT5G16970		AT-AER	alkenal reductase (.1)		Potri.017G004800 [exp]	6.55	0.9286
AT4G23880			unknown protein		Potri.003G140200 [exp]	9.64	0.9275
AT4G23880			unknown protein		Potri.003G140233 [exp]	11.13	0.9266
AT4G23880			unknown protein		Potri.003G140266 [exp]	12.44	0.9255
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Potri.004G181900 [exp]	18.52	0.9219
AT2G40740	WRKY	ATWRKY55, WRKY5...	WRKY DNA-binding protein 55 (....		Potri.019G059300 [exp]	21.49	0.9096
AT4G23220		CRK14	cysteine-rich RLK (RECEPTOR-li...		Potri.011G030012 [exp]	22.44	0.8994
AT1G61800		ATGPT2, GPT2	ARABIDOPSIS GLUCOSE-6-PHOSPHAT...		Potri.004G019900 [exp]	24.00	0.7966
AT4G23220		CRK14	cysteine-rich RLK (RECEPTOR-li...		Potri.011G029100 [exp]	24.18	0.9071
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.011G055000 [exp]	24.73	0.9232

Compare expression of checked genes

Potri.019G068300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.