Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71310 232 / 2e-78 RAD52-1B.2, RAD52-1B.1, RAD52-1A, RAD52-1 radiation sensitive 51-1, cobalt ion binding (.1.2.3) AT5G47870 134 / 7e-40 RAD52-2B, RAD52-2 radiation sensitive 51-2, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G072300 [exp] 138 / 4e-41 AT5G47870 223 / 3e-74 radiation sensitive 51-2, unknown protein Potri.003G158500 [exp] 138 / 4e-41 AT5G47870 233 / 3e-78 radiation sensitive 51-2, unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001196 [exp] 134 / 2e-39 AT5G47870 239 / 7e-81 radiation sensitive 51-2, unknown protein Lus10000280 [exp] 131 / 2e-38 AT5G47870 238 / 3e-80 radiation sensitive 51-2, unknown protein Lus10002565 [exp] 131 / 3e-38 AT5G47870 237 / 8e-80 radiation sensitive 51-2, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G068500.1 pacid=42774088 polypeptide=Potri.019G068500.1.p locus=Potri.019G068500 ID=Potri.019G068500.1.v4.1 annot-version=v4.1 ATGGCAGCAATGTCTACGAGGAAATTCCTTACGCTAAACCCACTATCCAGCTCTCCTTTGAAACAATCACTCCTTTTCTCATCTTCTCTCAGCTACTCTA CCAAGTCTTCTGCTTTTGGTGCCAGAAACAAAAACACAGCAACAGAGAAGCTTAGTGACATCGATGACAACGCTGAAAACGATTCTGTACCCACTTCAGG AATAAGTAGGCCACTCTCTGAAATACTCAAAGAACTCAACAAAAAGGTCCCTGATACTCTTGTTAGTCAGCGTGTTGATAATGGGTTTTCGATCAAATAT GTCCCTTGGCATCTTGTTAACAGGATTATGAATTTACATGCTCCAGAATGGTCTGGTGAGGTTCGGAACATCACTTATTCACCTGATAGCAAGTCTGTAT CTGTTGTTTACCGTGTCACTCTTTATGGGACTGATGCTGAGCTATACAGGGAGTCGACCGGAACTGCTGCTTTGGCTGAGATAGGTTTTGGAGATCCTGT GCAGAAGGCAGAAGCAATGGCATTTCGTAGAGCCTGTGCACGCTTTGGTCTTGGACTTCATCTTTATCATGAAGACATGTGCTAG
AA sequence Show only first row Show all	>Potri.019G068500.1 pacid=42774088 polypeptide=Potri.019G068500.1.p locus=Potri.019G068500 ID=Potri.019G068500.1.v4.1 annot-version=v4.1 MAAMSTRKFLTLNPLSSSPLKQSLLFSSSLSYSTKSSAFGARNKNTATEKLSDIDDNAENDSVPTSGISRPLSEILKELNKKVPDTLVSQRVDNGFSIKY VPWHLVNRIMNLHAPEWSGEVRNITYSPDSKSVSVVYRVTLYGTDAELYRESTGTAALAEIGFGDPVQKAEAMAFRRACARFGLGLHLYHEDMC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71310		RAD52-1B.2, RAD...	radiation sensitive 51-1, coba...		Potri.019G068500 [exp]	0	1
AT5G05830			RING/FYVE/PHD zinc finger supe...		Potri.010G195100 [exp]	3.31	0.8163
AT1G23220			Dynein light chain type 1 fami...		Potri.008G133000 [exp]	4.24	0.8043
AT1G26110		DCP5	decapping 5 (.1.2)		Potri.004G104000 [exp]	7.00	0.7247
AT4G24060	DOF	AtDof4,6	Dof-type zinc finger DNA-bindi...		Potri.015G009300 [exp]	7.74	0.7633
AT1G05180		AXR1	AUXIN RESISTANT 1, NAD(P)-bind...		Potri.002G229100 [exp]	8.06	0.7203
AT5G41620			unknown protein		Potri.001G096200 [exp]	9.48	0.7679
AT5G05830			RING/FYVE/PHD zinc finger supe...		Potri.009G039700 [exp]	9.48	0.7794
AT5G46700		TRN2, TET1	TORNADO 2, TETRASPANIN 1, Tetr...		Potri.001G141400 [exp]	10.39	0.7953
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Potri.004G147000 [exp]	18.70	0.7363
AT3G49500		SDE1, SGS2, RDR...	SUPPRESSOR OF GENE SILENCING 2...		Potri.018G028100 [exp]	22.29	0.7192	RDR6.2,RDR905

Compare expression of checked genes

Potri.019G068500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.