Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59610 1263 / 0 DRP2B, CF1, ADL3 Dynamin related protein 2B, dynamin-like 3 (.1) AT1G10290 1260 / 0 DRP2A, ADL6 DYNAMIN-RELATED PROTEIN 2A, dynamin-like protein 6 (.1) AT3G60190 225 / 3e-63 ADL1E, ADL4, ADLP2, EDR3, DRP1E ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) AT2G44590 215 / 1e-59 ADL1D DYNAMIN-like 1D (.1.2.3) AT1G14830 213 / 8e-59 DRP1C, ADL5, ADL1C DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) AT3G61760 199 / 3e-54 ADL1B DYNAMIN-like 1B (.1) AT5G42080 198 / 6e-54 RSW9, DRP1A, AG68, ADL1A, ADL1 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) AT4G33650 65 / 2e-10 APEM1, DRP3A, ADL2 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) AT2G14120 62 / 1e-09 DRP3B dynamin related protein (.1.2.3) AT1G60500 58 / 3e-08 DRP4C Dynamin related protein 4C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G228400 [exp] 1295 / 0 AT1G59610 1301 / 0.0 Dynamin related protein 2B, dynamin-like 3 (.1) Potri.003G001400 [exp] 1268 / 0 AT1G10290 1253 / 0.0 DYNAMIN-RELATED PROTEIN 2A, dynamin-like protein 6 (.1) Potri.002G135100 [exp] 216 / 7e-60 AT3G60190 1027 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.010G105900 [exp] 210 / 8e-58 AT1G14830 1100 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Potri.002G171200 [exp] 206 / 2e-56 AT3G61760 1090 / 0.0 DYNAMIN-like 1B (.1) Potri.001G147500 [exp] 204 / 7e-56 AT3G60190 976 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.014G043600 [exp] 199 / 5e-54 AT3G60190 1042 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.001G090600 [exp] 187 / 4e-50 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.003G141000 [exp] 183 / 9e-49 AT5G42080 1115 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030357 [exp] 1297 / 0 AT1G59610 1337 / 0.0 Dynamin related protein 2B, dynamin-like 3 (.1) Lus10007887 [exp] 1294 / 0 AT1G59610 1337 / 0.0 Dynamin related protein 2B, dynamin-like 3 (.1) Lus10007434 [exp] 1119 / 0 AT1G59610 1298 / 0.0 Dynamin related protein 2B, dynamin-like 3 (.1) Lus10024461 [exp] 941 / 0 AT1G10290 1068 / 0.0 DYNAMIN-RELATED PROTEIN 2A, dynamin-like protein 6 (.1) Lus10019170 [exp] 214 / 2e-59 AT1G14830 1131 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10029001 [exp] 214 / 4e-59 AT1G14830 1061 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10040117 [exp] 206 / 2e-55 AT3G60190 907 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10004007 [exp] 203 / 2e-55 AT3G61760 1099 / 0.0 DYNAMIN-like 1B (.1) Lus10019506 [exp] 194 / 3e-52 AT3G60190 1060 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10024462 [exp] 179 / 4e-52 AT1G59610 217 / 1e-66 Dynamin related protein 2B, dynamin-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [poplar] [flax] PH PF00169 [poplar] [flax] PH PH domain CL0023 [poplar] [flax] P-loop_NTPase PF00350 [poplar] [flax] Dynamin_N Dynamin family CL0023 [poplar] [flax] PF01031 [poplar] [flax] Dynamin_M Dynamin central region CL0023 [poplar] [flax] PF02212 [poplar] [flax] GED Dynamin GTPase effector domain
Representative CDS sequence Show only first row Show all	>Potri.019G068700.1 pacid=42774199 polypeptide=Potri.019G068700.1.p locus=Potri.019G068700 ID=Potri.019G068700.1.v4.1 annot-version=v4.1 ATGGAAGCGATCGAAGAGTTGTCTCAGTTATCGGAGTCGATGAAGCAAGCAACGGCGTTGCTTGCTGATGAGGATGTTGATGAAAATCCGAGTTCAAGTT CAAGACGGAGTTCAACTTTTCTTAACGTTGTTGCTCTTGGCAGTGTAGGTGCAGGTAAATCTGCAGTTTTGAACAGTGTAATTGGGCATCCTGTTCTGCC AACTGGTGAAAGTGCCACTCGGGCCCCTATAAGCATTGACTTGCAGAAAGATGGTTCTTTGAGCAGCAAATCCATTGTTTTGCAGATTGACAATAAATCT CAACAAGTTTCTGCAAGTGCTTTGCGGCGTTCTTTGCAGGATAGGCTAAGTAAGGGTGTCACTGACAATATTCGGGATGAGATATACCTGAAACTGCGCA CAAGCACAGCACCTTCCTTGAAATTGATTGACTTACCTGGCTTGGGTCAACGGATTGTGGATGAGTCTATGGTTGGTGACTATGCAGAGCACAGTGATGC CATTTTGCTAGTTATTGTACCTGCAGCCCAGGCACCTGAAATTGCTTCATATCGAGCCCTCAGGATTGCCAAGGAGTACGATGGAGAAGGTACTAGAACT GTTGGTGTAATTAGTAAAATAGATCAAGCTGCTACGGACCAGAAAGCTCTCGCGGCTGTTCAGGCTCTCCTTCTAAATCAAGGGCCACCAAAAACCACTG ATATCCCATGGATTGCTTTAATTGGTCAATCAGTTTCAATTGCTTCTGCGCAGTCTGGGTCTGAAAGCTCTCTGGAAACTGCATGGAAAGCAGAGAGTGA AAGTCTCAAAACGATACTGACTGGAGCCCCGCAGAGCAAGCTAGGCAGAATTGCTTTACTAGATGCTCTGGCACAGCAAATTCGTAAGCGCATGAAAGTT CGGCTTCCAAATGTTCTCTCTGGTTTGCAAGGGAAGTCACAAACAGTTCAGGATGAACTAATGAGGCTTGGGGAACAGATGGTTCAAAGTGCTGAGGGCA CAAGAGCCATAGCTTTGGAGCTTTGTCGTGAATTTGAGGATAAATTTCTCCAACACATTATGACGGGTGAGGGTTCTGGTTGGAAAATTGTTGCAAGTTT TGAAGGGAATTTTCCAAATAGGATCAAGCAACTTCCTTTGGATAGACATTTTGATATCAATAATGTTAAGAGGATTGTCTTAGAAGCAGATGGATATCAA CCATATCTTATATCACCTGAAAAGGGTTTAAGATCCTTAATAAAAGGTGTGCTGGAGCTTGCAAAAGAACCATCACGTCTCTGTGTTGATGAGGTACATC GTGTCCTGGTGGATATAGTTTCTGCTTCTGCAAATGCTACACCTGGTCTGGGAAGATACCCTCCTTTCAAGAGAGAGGTTGTAGCCATTGCAAGTGCTGC GTTAGATGGGTTTAAGAATGAATCAAAAAAGATGGTTGTCGCATTGGTTGATATGGAGCGAGTATTTGTGCCGCCACAACATTTCATCCGTTTGGTGCAA AGGAGGATGGAAAGACAGCGCCGAGAGGAGGAGCTTAAGAACCGGTCCTCAAAGAAAGGAAATGATGCTGAGCAGGCTATATTAAACAGGGCGACTAGTC CTCAAACAGGTGGAAGTTTGAAATCAATGAGAGAGAAATCCAATCAGGCTGATAAGGAAGTGCAGGAGGCTTCTAGCTTAAAAACTGCTGGTCCTGAAGG AGAACTAACAGCAGGATTTTTATCAAAGAAAAGTGCAAAGACTAATGGATGGAGCAAGCGATGGTTTGTTTTGAACGAGAAGACTGGGAAGCTTGGTTAC ACAAAAACACAAGAGGAGAGACATTTTCGTGGTGTCATCACTTTGGAGGAATGCAACATTGAAGAGGTTCCAGATGAGGAAGAACCTCCTTCAAAGAGTT CAAAGGATAAGAAAGTCAATGGACCAGATACTAAAGCTCCCAGTCTTGTATTTAAGATGACCAGCAAGGTTCCATACAAAACCGTTTTGAAAGCTCACAG TGCTGTTATTTTGAAGGCTGAGAGCATGGCTGACAAAGTTGAGTGGATAAACAAGATATTAAAAATTGCTCAACCTTCTAAAGGAGGGAAAATGAGGGGT GTATCTCCTGAAGGTGGTCCTGCAATGCGGCATAGTCTTTCTGATGGCTCTTTGGATACGATGGCTCGAAGACCTGCCGATCCGGAAGAAGAACTTCGAT GGATGTCCCAAGAAGTGCGCGGATATGTAGAGGCAGTTTTGAATAGCTTAGCTGCTAATGTTCCCAAAGCAGTTGTTCTTTGCCAAGTTGAGAAAGCAAA GGAAGATATGCTAAATCAGTTGTATAGCTCTATCAGCGCTCAAAGCACAGCAAGGATTGAAGAGCTTCTTCAAGAGGACCAGAATGTAAAGCGCAGGAGG GAGCGGTACCAGAAACAGTCCTCTCTCCTTTCAAAGCTAACACGCCAACTCAGCATCCACGACAACCGAGCTGCTGCTGCTTCTAGCTGGTCTAGTGGTG ATGGAGCAGAGAGCACCACCCCAAGCCCAAGGACAAATGGTTCGGCTGGCGATGACTGGAGATCTGCATTTGATGCAGCTGCCAACGGTCCTTTAGACAT TGGAAGCTTATCAAGACCTGCATCAAATGGTCACAGTCGATATTACAGCAATGGTGATGTGAGCACCGGTTCCAACTCCAGCAGCCGTCGCACTCCTAAT CGCACTCCTAATCGGTTTCCACCCGCTCCTCCACAGTCTGGTTCTTCAGGTTACAGATATTAA
AA sequence Show only first row Show all	>Potri.019G068700.1 pacid=42774199 polypeptide=Potri.019G068700.1.p locus=Potri.019G068700 ID=Potri.019G068700.1.v4.1 annot-version=v4.1 MEAIEELSQLSESMKQATALLADEDVDENPSSSSRRSSTFLNVVALGSVGAGKSAVLNSVIGHPVLPTGESATRAPISIDLQKDGSLSSKSIVLQIDNKS QQVSASALRRSLQDRLSKGVTDNIRDEIYLKLRTSTAPSLKLIDLPGLGQRIVDESMVGDYAEHSDAILLVIVPAAQAPEIASYRALRIAKEYDGEGTRT VGVISKIDQAATDQKALAAVQALLLNQGPPKTTDIPWIALIGQSVSIASAQSGSESSLETAWKAESESLKTILTGAPQSKLGRIALLDALAQQIRKRMKV RLPNVLSGLQGKSQTVQDELMRLGEQMVQSAEGTRAIALELCREFEDKFLQHIMTGEGSGWKIVASFEGNFPNRIKQLPLDRHFDINNVKRIVLEADGYQ PYLISPEKGLRSLIKGVLELAKEPSRLCVDEVHRVLVDIVSASANATPGLGRYPPFKREVVAIASAALDGFKNESKKMVVALVDMERVFVPPQHFIRLVQ RRMERQRREEELKNRSSKKGNDAEQAILNRATSPQTGGSLKSMREKSNQADKEVQEASSLKTAGPEGELTAGFLSKKSAKTNGWSKRWFVLNEKTGKLGY TKTQEERHFRGVITLEECNIEEVPDEEEPPSKSSKDKKVNGPDTKAPSLVFKMTSKVPYKTVLKAHSAVILKAESMADKVEWINKILKIAQPSKGGKMRG VSPEGGPAMRHSLSDGSLDTMARRPADPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLYSSISAQSTARIEELLQEDQNVKRRR ERYQKQSSLLSKLTRQLSIHDNRAAAASSWSSGDGAESTTPSPRTNGSAGDDWRSAFDAAANGPLDIGSLSRPASNGHSRYYSNGDVSTGSNSSSRRTPN RTPNRFPPAPPQSGSSGYRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Potri.019G068700 [exp]	0	1
AT5G28850			Calcium-binding EF-hand family...		Potri.013G047300 [exp]	2.00	0.6769
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.001G270100 [exp]	3.00	0.6901	RAB11.15
AT4G03550		ATGSL5, PMR4, G...	POWDERY MILDEW RESISTANT 4, gl...		Potri.013G131300 [exp]	4.24	0.6646
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Potri.019G015111 [exp]	4.89	0.6295
AT4G18905			Transducin/WD40 repeat-like su...		Potri.007G019601 [exp]	10.39	0.6629
AT1G74740		CDPK1A, CPK30, ...	CALCIUM-DEPENDENT PROTEIN KINA...		Potri.012G071700 [exp]	12.00	0.5847	CDPK1.3
AT3G16270			ENTH/VHS family protein (.1)		Potri.001G187000 [exp]	13.41	0.6247
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.005G253400 [exp]	13.41	0.6465
AT1G23040			hydroxyproline-rich glycoprote...		Potri.010G113300 [exp]	14.24	0.6295
AT3G66654			Cyclophilin-like peptidyl-prol...		Potri.010G144500 [exp]	15.71	0.6081

Compare expression of checked genes

Potri.019G068700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.