Plant FIBer expression Database

Potri.019G068802 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.019G068802.1 pacid=42773243 polypeptide=Potri.019G068802.1.p locus=Potri.019G068802 ID=Potri.019G068802.1.v4.1 annot-version=v4.1
ATGGAAAATGCTATATTGTCCTTGGAGGGGAATAATCCTGAAGTTGAAGAAAAGTCAAGTTCTGCAAATAAAAGTTCTGAAAGTGTGGATGGAGGGAAGA
CATGGAAGCGAACTCCGTTCTATTGTTCTGAGGGATTGGGACTGTCTGCAGGTGTTGATTCTCTTTGTTCCGAGGATGAGGTGCTGTATCAAGACGAGCA
GGAATTGCAAGATCAAACATTGTTGGGCTATGCAACTTTTGATGATCTCAAATTTGATGGCCTGTCTCCGTCTATACAGAATTGTCAGGAGGAGATCACA
AAGCTTGGTGCAATCGTCCAAAATGGGAATCAAGACAGCGAACACAAGAAGGACAAACGATCTGAGGAATTGCATTTAGCTTCTCTTGAGCTGCTAAGAA
GATTTGGTAATGGGTTCAGACTCTTGAAGAGTGGAAGGATAGTTGAGCCAACTTATGATGCACCACCGTACACAGCGGTGGAGAGCCGGGGATTCTCAAC
AGAAGAAATCATGGGGATTGCGCTGGTGCAAAGTTTATCCAGTCTGCTTCCCAATCAGTTGATGTTTCCTCTATGTTTGACAATCCCTTCGATCTTTCTT
TGGCTGGTCTTTCCCACGAGGATGCCAAAATGGTGGAGCTCTCTGAATTCCTTTTGGCTTCTGCTGAGAAAGTAA
AA sequence
>Potri.019G068802.1 pacid=42773243 polypeptide=Potri.019G068802.1.p locus=Potri.019G068802 ID=Potri.019G068802.1.v4.1 annot-version=v4.1
MENAILSLEGNNPEVEEKSSSANKSSESVDGGKTWKRTPFYCSEGLGLSAGVDSLCSEDEVLYQDEQELQDQTLLGYATFDDLKFDGLSPSIQNCQEEIT
KLGAIVQNGNQDSEHKKDKRSEELHLASLELLRRFGNGFRLLKSGRIVEPTYDAPPYTAVESRGFSTEEIMGIALVQSLSSLLPNQLMFPLCLTIPSIFL
WLVFPTRMPKWWSSLNSFWLLLRK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.019G068802
[exp]
0 1
AT5G20635 AGG3 Arabidopsis G protein gamma su... Potri.018G062400
[exp]
10.19 0.8690
AT5G25460 Protein of unknown function, D... Potri.003G059800
[exp]
10.39 0.8020
Potri.006G229100
[exp]
11.83 0.8381
AT3G13040 GARP myb-like HTH transcriptional r... Potri.018G151400
[exp]
18.57 0.8519
Potri.012G026150
[exp]
28.54 0.8199
AT3G07230 wound-responsive protein-relat... Potri.014G191300
[exp]
37.41 0.8129
Potri.010G219950
[exp]
41.24 0.8145
AT5G48930 HCT hydroxycinnamoyl-CoA shikimate... Potri.005G028100
[exp]
41.89 0.7348
Potri.010G139766
[exp]
49.17 0.8108
AT2G06925 ATSPLA2-ALPHA, ... PHOSPHOLIPASE A2-ALPHA, Phosph... Potri.012G049101
[exp]
49.49 0.8082

Potri.019G068802 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.