Plant FIBer expression Database

Potri.019G068900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G71360 484 / 3e-165 Galactose-binding protein (.1)
AT1G22882 462 / 4e-156 Galactose-binding protein (.1)
AT4G23950 313 / 2e-99 Galactose-binding protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G141500
[exp]
379 / 2e-124 AT4G23950 411 / 4e-137 Galactose-binding protein (.1.2)
Potri.001G089700
[exp]
361 / 2e-117 AT4G23950 399 / 3e-132 Galactose-binding protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002929
[exp]
632 / 0 AT1G71360 476 / 1e-159 Galactose-binding protein (.1)
Lus10003532
[exp]
579 / 0 AT1G71360 432 / 3e-146 Galactose-binding protein (.1)
Lus10032405
[exp]
348 / 1e-111 AT4G23950 446 / 5e-150 Galactose-binding protein (.1.2)
Lus10023065
[exp]
339 / 1e-108 AT4G23950 427 / 9e-143 Galactose-binding protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0202 GBD PF07738 Sad1_UNC Sad1 / UNC-like C-terminal
Representative CDS sequence
>Potri.019G068900.5 pacid=42773320 polypeptide=Potri.019G068900.5.p locus=Potri.019G068900 ID=Potri.019G068900.5.v4.1 annot-version=v4.1
ATGCAGAGATCACGTAGAGCTTTTCTTGAAAGAAGAGCTTTGGAGAAGGATATTCGTGGAAAGAATCAATTCTACAAGGTTTCTTTGTCTTTGGTTTTTG
TTTTGTGGGGGCTTGTCTTTCTCTTGAGTATATGGATCAGTCATGGCGATGGTTATACAGATGGGTCTGGAGACCTTCCAGTTAGCATATCCACTTGGAA
TGAAGCAACAGCGGAACCCAGCAAATGCTCTGTTTCTGTACATAAAAATCAATCAAAAGAAACTTGTCCTGTGTGTTCTGATGAGAGCTCGTGTACAGAT
AGTGCTGAAACCCGAGGTTCCAATGACACATTGCTTATTAGTGAAGGAAACACAAATGATGCCTTTGCTGTTGAGCAATCTGAGGTAGACTCTGGTTCAG
CTGTGAAGTCTGAAAATAATGCTCAAAAGACTGATCGACCATCTCGTGTTGTGCCCCTCGGTCTTGATGAATTCAAAAGTAGAGCATTTAGCTCTAAAAG
TAAACCTGGAACTGGTCAAGTTGGAGGTGTAATTCATAGGATGGAGCCTGGAGGTAAAGAATACAACTATGCTTCAGCTTCCAAAGGAGCCAAGGTTTTG
GCTTTCAATAAGGAAGCAAAGGGGGCCTCCAATATCTTAGTCGGAGACAAGGATAAGTACCTTCGGAATCCATGCTCTGCAGAGGAGAAATTTGTTGTAA
TAGAACTGTCAGAAGAAACACTGGTAGATACTATTGAAATAGCAAATTTTGAGCATTATTCTTCTAACTTGAAACATTTTGAGCTGCTTGGAAGCTTGGT
TTATCCAACAGGCGACTGGGTGAAGCTTGGGAATTTTACAGCTGCAAATGTTAAGCATGCTCAGAGGTTTACTCTTCAGGTGCTGATAGGGGTGAGATAT
CTAAGGTTGAATCTTCTGAGCCATTATGGTTCAGAATTTTATTGTACGTTAAGTGTTATTGAAATTTATGGAGTGGATGCTGTCGAGCAAATGCTGGAGG
ATATGATCTCTGATCAAGATAATTTATTTGGATATGAGGTGGGAGCTGGTGAGCAGAAACCACCGTCATCCCAACTAGAGTCCACTCAAGATGATGATAC
TTATACAGACTTGTACAGTGATATGGAAGACTCTTCAGTGGAAAACTCAAATGCAAAGAATGAAGTTGTGAAAAATAAATTGCCAGATCCAGTTGAAGAA
GTTCGGCATCAACAAGTTGGCAGGATGCCTGGGGACTCTGTTCTCAAAATATTGATGCAAAAAGTTCGTTCTCTGGACTTGAGTTTATCCATTTTGGAGC
GATACCTTGAGGAAGTGAATTCTAAATACGGCAATATTTTCAAAGAAATTGACAAGGATTTAGGAGAGAAAGATATACTTTTAGAGAAGATGAGATCAGA
TGTAAAGAGTCTCCACAGCAGCCAGGATCTCATTGCCAAAGATGTTAATGATCTTATTTCTTGGAAATCCCTTGCTTCCACACAGTTGGACGGACTCCTC
AGGGATAATTTGATTCTCAGATCAAAGATTGAAAGGGTTCTAGAGATTCAGAAATCTATGGAGAATAAGGGTATAGCAGTGTTTCTTATATGTTTAATTT
TTGGGATTTTGGCTTTTGTGAGGCTATTTGTAGATTTGTTGTTGAGTGTTTATATGGCATTTAATGTTCAAGGAACAGAGTCCAGGAAATTTTGTTGGAC
AGGCTCTTCCTGGCACTTCTTACTATTGAGCTGTACCGTTATTATTTTGGTAATATCATTATAA
AA sequence
>Potri.019G068900.5 pacid=42773320 polypeptide=Potri.019G068900.5.p locus=Potri.019G068900 ID=Potri.019G068900.5.v4.1 annot-version=v4.1
MQRSRRAFLERRALEKDIRGKNQFYKVSLSLVFVLWGLVFLLSIWISHGDGYTDGSGDLPVSISTWNEATAEPSKCSVSVHKNQSKETCPVCSDESSCTD
SAETRGSNDTLLISEGNTNDAFAVEQSEVDSGSAVKSENNAQKTDRPSRVVPLGLDEFKSRAFSSKSKPGTGQVGGVIHRMEPGGKEYNYASASKGAKVL
AFNKEAKGASNILVGDKDKYLRNPCSAEEKFVVIELSEETLVDTIEIANFEHYSSNLKHFELLGSLVYPTGDWVKLGNFTAANVKHAQRFTLQVLIGVRY
LRLNLLSHYGSEFYCTLSVIEIYGVDAVEQMLEDMISDQDNLFGYEVGAGEQKPPSSQLESTQDDDTYTDLYSDMEDSSVENSNAKNEVVKNKLPDPVEE
VRHQQVGRMPGDSVLKILMQKVRSLDLSLSILERYLEEVNSKYGNIFKEIDKDLGEKDILLEKMRSDVKSLHSSQDLIAKDVNDLISWKSLASTQLDGLL
RDNLILRSKIERVLEIQKSMENKGIAVFLICLIFGILAFVRLFVDLLLSVYMAFNVQGTESRKFCWTGSSWHFLLLSCTVIILVISL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G71360 Galactose-binding protein (.1) Potri.019G068900
[exp]
0 1
AT3G24440 VRN5, VIL1 VERNALIZATION 5, VIN3-LIKE 1, ... Potri.018G076500
[exp]
1.00 0.8575
AT5G46910 Transcription factor jumonji (... Potri.003G096100
[exp]
2.82 0.8065
AT2G25800 Protein of unknown function (D... Potri.006G238200
[exp]
6.48 0.8462
AT5G38700 unknown protein Potri.014G123400
[exp]
9.48 0.7875
AT4G26690 GDPDL3, GPDL2, ... SHAVEN 3, MUTANT ROOT HAIR 5, ... Potri.001G360800
[exp]
11.22 0.8010
AT5G37710 alpha/beta-Hydrolases superfam... Potri.004G086900
[exp]
13.96 0.7412
AT5G38700 unknown protein Potri.002G198800
[exp]
14.86 0.7610
AT3G06550 RWA2 REDUCED WALL ACETYLATION 2, O-... Potri.008G102300
[exp]
16.34 0.8149
AT1G08200 AXS2 UDP-D-apiose/UDP-D-xylose synt... Potri.004G189900
[exp]
22.44 0.7679 AXS1.2
Potri.006G233301
[exp]
22.73 0.7767

Potri.019G068900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.