Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71380 762 / 0 ATCEL3 ,ATGH9B3 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) AT1G22880 729 / 0 ATCEL5 ,ATGH9B4 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, ARABIDOPSIS THALIANA CELLULASE 5, cellulase 5 (.1.2) AT4G02290 583 / 0 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT1G02800 570 / 0 ATCEL2 cellulase 2 (.1) AT1G70710 547 / 0 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolase 9B1 (.1) AT1G23210 533 / 0 ATGH9B6 glycosyl hydrolase 9B6 (.1) AT4G39010 519 / 0 ATGH9B18 glycosyl hydrolase 9B18 (.1) AT4G39000 473 / 4e-164 ATGH9B17 glycosyl hydrolase 9B17 (.1) AT4G09740 452 / 4e-156 ATGH9B14 glycosyl hydrolase 9B14 (.1) AT4G23560 449 / 5e-155 ATGH9B15 glycosyl hydrolase 9B15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G202400 [exp] 583 / 0 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.014G126900 [exp] 565 / 0 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.001G083200 [exp] 557 / 0 AT1G02800 593 / 0.0 cellulase 2 (.1) Potri.004G162200 [exp] 525 / 0 AT4G39010 703 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.010G109200 [exp] 524 / 0 AT1G70710 829 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.009G123900 [exp] 520 / 0 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.008G132700 [exp] 519 / 0 AT1G70710 808 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.015G127900 [exp] 510 / 1e-178 AT1G23210 568 / 0.0 glycosyl hydrolase 9B6 (.1) Potri.015G128000 [exp] 490 / 1e-170 AT1G70710 569 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002930 [exp] 764 / 0 AT1G71380 706 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Lus10008208 [exp] 580 / 0 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10038223 [exp] 570 / 0 AT4G02290 706 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10001666 [exp] 539 / 0 AT1G02800 600 / 0.0 cellulase 2 (.1) Lus10018077 [exp] 538 / 0 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10042071 [exp] 531 / 0 AT4G39010 717 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10029071 [exp] 525 / 0 AT1G70710 827 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10025880 [exp] 521 / 0 AT1G71380 646 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Lus10027205 [exp] 501 / 3e-175 AT1G70710 584 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10027201 [exp] 493 / 1e-171 AT1G23210 560 / 0.0 glycosyl hydrolase 9B6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF00759 [poplar] [flax] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Potri.019G069300.1 pacid=42773155 polypeptide=Potri.019G069300.1.p locus=Potri.019G069300 ID=Potri.019G069300.1.v4.1 annot-version=v4.1 ATGAGAAGGGGAGCTTCTTTCTGCCTCTTGTTTTCGCTGTCACTTGCTCTCTTGGGTTTTGTCCATGCCAACCCCAATTACAAGGATGCCCTAGCAAAGT CCATACTGTTTTTTCAAGGTCAGAGGTCAGGGAGGCTCCCCAGATCCCAGCAGCTCGCTTGGAGGTCCGATTCCGGGCTCTCTGATGGCTTATTCGCCCA CGTGGATTTAACTGGAGGGTACTATGATGCTGGAGACAATGTCAAGTTTAATTTCCCAATGGCCTTCACCACGACAATGCTCTCATGGAGCACGCTCGAG TATGGCAAGAGAATGGGACCTGAATTACCAAATGCAAGGGCCGCAATCCGTTGGGCCACGGACTATCTTCTAAAATGTGCCACCGCCACCCCTGGTAAGC TCTATGTGGGTGTTGGTGATCCGAATGTCGATCACAAGTGCTGGGAGAGGCCAGAGGATATGGACACGGCCCGAACTGTGTTTTCGGTCTCGGCAAGAAG CCCTGGCTCGGATGTTGCCGGTGAGACCGCCGCGGCATTAGCTGCTGCCTCAATGGTTTTTCGAAAAGTCGATCGTAAATACTCGGCCTTGCTACTGAGA ACAGCCAGGAAGGTTTTTCAATTTGCCATGCAATACCAAGGTGCCTATAGTGATTCTCTTGGATCAGCAGTGTGCCCATTTTACTGCTCGTATTCTGGTT ATAAGGATGAACTACTGTGGGGAGCTGCATGGCTGTTCAGGGCAACAAACGAAATGTCCTACTATAACATCTTCAAGTCCTTGGGAGCTGACGACCAACC TGACCTATTCAGCTGGGACAACAAGTATGCTGGTGTTCATGTTCTTTTATCAAGGCGAGCATTGCTCAACAACGACAAAAACTTCGAGCAATTTGAAGGA GAAGCAGAAAGTTTCATGTGCCGGATCTTACCCAACTCACCTTATAAAACTACACAGTATACACAGGGTGGACTGATGTACAAGCTACCTGAAAGCAACC TCCAATATGTGACATCCATAACATTCTTGCTCACCACTTATGCTAAATACATGAAAGCAACCAGGCACACCTTCAACTGTGGCAATCTCTTGGTCACTCC AAATTCCCTGTTATATGTGGCTAAAAGACAGGTGGATTACATACTAGGGGAGAACCCAATTCGAATGTCCTACATGGTAGGATTCGGGCCAAATTTTCCT AAGAGAATTCACCATAGAGGTTCTTCTTTGCCATCATTGGCAAGCCACCCACAAGCTATAGGTTGTGATAGTGGCTTCGAGCCTTTCTTCCATTCAGCAA ATCCTAATCCTAACATCTTAACCGGAGCTATTGTCGGCGGTCCAAACCAGAATGATGGCTACCCAGATGAACGCAGCGATTATAGTCATTCGGAGCCTGC TACATACATCAACGCTGCTATGGTGGGACCCTTGGCATACTTTGCTGCTACCTTAAATTAG
AA sequence Show only first row Show all	>Potri.019G069300.1 pacid=42773155 polypeptide=Potri.019G069300.1.p locus=Potri.019G069300 ID=Potri.019G069300.1.v4.1 annot-version=v4.1 MRRGASFCLLFSLSLALLGFVHANPNYKDALAKSILFFQGQRSGRLPRSQQLAWRSDSGLSDGLFAHVDLTGGYYDAGDNVKFNFPMAFTTTMLSWSTLE YGKRMGPELPNARAAIRWATDYLLKCATATPGKLYVGVGDPNVDHKCWERPEDMDTARTVFSVSARSPGSDVAGETAAALAAASMVFRKVDRKYSALLLR TARKVFQFAMQYQGAYSDSLGSAVCPFYCSYSGYKDELLWGAAWLFRATNEMSYYNIFKSLGADDQPDLFSWDNKYAGVHVLLSRRALLNNDKNFEQFEG EAESFMCRILPNSPYKTTQYTQGGLMYKLPESNLQYVTSITFLLTTYAKYMKATRHTFNCGNLLVTPNSLLYVAKRQVDYILGENPIRMSYMVGFGPNFP KRIHHRGSSLPSLASHPQAIGCDSGFEPFFHSANPNPNILTGAIVGGPNQNDGYPDERSDYSHSEPATYINAAMVGPLAYFAATLN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71380		ATCEL3 ,ATGH9B3	ARABIDOPSIS THALIANA GLYCOSYL ...		Potri.019G069300 [exp]	0	1
AT1G72160			Sec14p-like phosphatidylinosit...		Potri.004G138200 [exp]	1.00	0.9330
AT2G35150		EXL7, EXL1	EXORDIUM LIKE 7, EXORDIUM like...		Potri.015G122100 [exp]	1.41	0.9121
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Potri.001G081400 [exp]	2.44	0.8845	Pt-LBD3.2
AT3G57040		ATRR4, ARR9	RESPONSE REGULATOR 4, response...		Potri.002G082200 [exp]	9.16	0.8620
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Potri.003G149000 [exp]	12.08	0.8134	LBD3.1
AT1G69080			Adenine nucleotide alpha hydro...		Potri.008G109000 [exp]	13.22	0.8718
AT5G63180			Pectin lyase-like superfamily ...		Potri.015G087800 [exp]	18.16	0.8634
AT1G14890			Plant invertase/pectin methyle...		Potri.010G109300 [exp]	18.24	0.8636
AT2G40480			Plant protein of unknown funct...		Potri.019G049201 [exp]	19.39	0.8764
AT4G24780			Pectin lyase-like superfamily ...		Potri.012G091500 [exp]	20.59	0.8651

Compare expression of checked genes

Potri.019G069300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.