Plant FIBer expression Database

Potri.019G070200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G10890 302 / 4e-100 Glycosyl hydrolase superfamily protein (.1)
AT5G66460 298 / 2e-98 MAN7, AtMAN7 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1)
AT3G10900 290 / 1e-95 Glycosyl hydrolase superfamily protein (.1)
AT5G01930 269 / 1e-86 MAN6, AtMAN6 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1)
AT1G02310 249 / 1e-79 MAN1 endo-beta-mannanase 1, Glycosyl hydrolase superfamily protein (.1)
AT2G20680 219 / 8e-68 MAN2, AtMAN2 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1)
AT4G28320 218 / 2e-67 MAN5, AtMAN5 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1)
AT3G30540 203 / 1e-62 Glycosyl hydrolase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G120500
[exp]
312 / 8e-104 AT5G66460 588 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1)
Potri.007G022000
[exp]
306 / 2e-101 AT5G66460 573 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1)
Potri.005G229600
[exp]
291 / 8e-96 AT5G66460 542 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1)
Potri.002G184500
[exp]
290 / 2e-95 AT5G66460 447 / 5e-156 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1)
Potri.006G109900
[exp]
280 / 4e-90 AT5G01930 659 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1)
Potri.016G138600
[exp]
276 / 2e-89 AT5G01930 683 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1)
Potri.013G130400
[exp]
214 / 1e-65 AT2G20680 661 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1)
Potri.006G009400
[exp]
211 / 4e-64 AT4G28320 430 / 2e-148 endo-beta-mannase 5, Glycosyl hydrolase superfamily protein (.1)
Potri.016G014801
[exp]
114 / 5e-30 AT2G20680 231 / 2e-74 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030347
[exp]
372 / 8e-127 AT5G66460 422 / 2e-145 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1)
Lus10007900
[exp]
367 / 1e-124 AT5G66460 417 / 4e-143 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1)
Lus10014288
[exp]
295 / 3e-97 AT5G66460 583 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1)
Lus10025995
[exp]
297 / 9e-95 AT5G66460 577 / 0.0 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1)
Lus10007210
[exp]
282 / 2e-92 AT5G66460 401 / 5e-138 endo-beta-mannase 7, Glycosyl hydrolase superfamily protein (.1)
Lus10014184
[exp]
275 / 4e-89 AT5G01930 674 / 0.0 endo-beta-mannase 6, Glycosyl hydrolase superfamily protein (.1)
Lus10007211
[exp]
279 / 8e-87 AT1G02310 405 / 4e-134 endo-beta-mannanase 1, Glycosyl hydrolase superfamily protein (.1)
Lus10027329
[exp]
218 / 6e-67 AT2G20680 438 / 8e-152 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1)
Lus10039032
[exp]
216 / 2e-66 AT2G20680 433 / 8e-150 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1)
Lus10031650
[exp]
207 / 3e-63 AT2G20680 655 / 0.0 endo-beta-mannase 2, Glycosyl hydrolase superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0058 Glyco_hydro_tim PF00150 Cellulase Cellulase (glycosyl hydrolase family 5)
Representative CDS sequence
>Potri.019G070200.2 pacid=42774131 polypeptide=Potri.019G070200.2.p locus=Potri.019G070200 ID=Potri.019G070200.2.v4.1 annot-version=v4.1
TCAGTTACTTGTGAAGCTGGGCTTTCTACGTCTGGATTCATTCAAACTAGAAATGCCCAACTTGTCCTAAATGGCTCTCAATTCCTTTTCACACCGCCAA
GTCAAAGGTACAAAGTATCTAATGTGTTTCACGAGGCTACTGCTGCAAGTCTCACTGTCTCTCTGCAGATTTCTCCTGGGGTTTATAACGAGCATGTCTT
TCAGGGACTTGATTTCGTGATTTTCGAGGCAAGAAAGTACATAATTTGCTTTATCTTGACATTGAGCAACAACTACCATGACTTTGGAGGGAGACCACAG
TACGTGAACTGGGCTAGAGCCGCAGGAGTGCCAATAAACAAAGATGATGATTTTTATACAAATGCAGTTGTGAAGGGCTATTGCAAGAACCATGTCAAGG
TATATATTTTGAGCACCAAATCAAATATTGTATATATGGATGAACCAACCATCATGGCATGGGAATTGATAAACGAACCTCACTGCCATGTTGACTACTC
AGGAAAGACTGTAAATGGATGGGTTCAAGAGATGGCACCCTTTGTTAAATCTATTAATACCAAGCATTTGTTGTCAGTAGGCATGAAAGGCTTCTATGGG
GACTCAATTCCTAACAGAAAACACAGATTTTATTACTTAAGAAGACATGTTGCCAAGATAATTAACATGGTACTGTTCTATCAAATTTACAGGGTATCTG
GACAGAATGATAATGCACAAATGGAATTCATGCAAAGGTGGATGTCCAGTCATTGGACAGACTCAAAAACCATATTGAAGAAGCCATTGGTTTTTGCTGA
ATTTGGGAAATCAAATAAAGATCCAGGATACACTACAAGTGTGAGGGATTCTTTTTTGAATACAGTCCATACAAGCATCTACAACTCCGCAAGAAATGGA
GGGACAATTGGTGGTGGCTTCGTTTGGCAAATCTTGGCTGAAGGTATGGACTCATACTATGATGGATACGAGATAGTTTTATCTCAAAATCCATCAACAA
GCAGTGTCATTGCTCAACAGTCTAATAAGATGATGACTTTTGAACATATTGAAAAGGCGAATTTGAAGTAA
AA sequence
>Potri.019G070200.2 pacid=42774131 polypeptide=Potri.019G070200.2.p locus=Potri.019G070200 ID=Potri.019G070200.2.v4.1 annot-version=v4.1
SVTCEAGLSTSGFIQTRNAQLVLNGSQFLFTPPSQRYKVSNVFHEATAASLTVSLQISPGVYNEHVFQGLDFVIFEARKYIICFILTLSNNYHDFGGRPQ
YVNWARAAGVPINKDDDFYTNAVVKGYCKNHVKVYILSTKSNIVYMDEPTIMAWELINEPHCHVDYSGKTVNGWVQEMAPFVKSINTKHLLSVGMKGFYG
DSIPNRKHRFYYLRRHVAKIINMVLFYQIYRVSGQNDNAQMEFMQRWMSSHWTDSKTILKKPLVFAEFGKSNKDPGYTTSVRDSFLNTVHTSIYNSARNG
GTIGGGFVWQILAEGMDSYYDGYEIVLSQNPSTSSVIAQQSNKMMTFEHIEKANLK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G10890 Glycosyl hydrolase superfamily... Potri.019G070200
[exp]
0 1

Potri.019G070200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.