Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 284 / 3e-80 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G19520 268 / 2e-74 disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16890 248 / 3e-68 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G69550 245 / 5e-67 disease resistance protein (TIR-NBS-LRR class) (.1) AT2G17050 243 / 2e-66 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G12010 229 / 4e-62 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G25510 228 / 3e-61 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 225 / 1e-60 transmembrane receptors;ATP binding (.1.2) AT3G51560 221 / 4e-59 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G36150 218 / 3e-58 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G069600 [exp] 1629 / 0 AT5G17680 647 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070001 [exp] 1446 / 0 AT5G17680 481 / 5e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070565 [exp] 1444 / 0 AT5G17680 482 / 3e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070651 [exp] 1400 / 0 AT5G17680 630 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070393 [exp] 1371 / 0 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 1318 / 0 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 655 / 0 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070350 [exp] 519 / 2e-177 AT5G45200 152 / 3e-40 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G070300 [exp] 462 / 1e-148 AT5G17680 558 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016029 [exp] 194 / 2e-50 AT4G12010 451 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10023051 [exp] 190 / 2e-49 AT4G12010 415 / 2e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10018616 [exp] 184 / 3e-47 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10029722 [exp] 179 / 6e-46 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10001537 [exp] 174 / 3e-45 AT5G44510 175 / 1e-45 target of AVRB operation1 (.1) Lus10041078 [exp] 175 / 5e-45 AT5G17680 399 / 6e-126 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10039850 [exp] 174 / 4e-44 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10008221 [exp] 174 / 4e-44 AT4G12010 400 / 8e-120 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10010223 [exp] 172 / 2e-43 AT5G17680 218 / 6e-58 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 168 / 2e-42 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G070479.1 pacid=42773454 polypeptide=Potri.019G070479.1.p locus=Potri.019G070479 ID=Potri.019G070479.1.v4.1 annot-version=v4.1 ATGCAGAGTGCACCTTCCTCATGGCCTCGATCTCTTTCTGAAGAGTTGAGGTATCTCCATTGGGATGGATACCCTTTGACATCTTTGCCTAGCAATTTTC GTCCACAGAACCTTGTTGAAATTAACCTATCATGTAGCAAGGTTAACCAACTGTGGAGAGGAGACCAGAATCTCGTCAATTTAAAAGATGTCAACCTCAG CAATTGCGAGCACATAACTTTCATGCCAGACCTTTCAAAGGCCAGAAACCTTGAGAGATTGAATCTTCAATTCTGTACAAGTTTGGTTAAGTTTCCTTCA TCTGTTCAGCATCTGGACAAGCTTGTTGATTTAGATTTGAGAGGCTGTAAAAGACTAATCAATCTTCCCAGTAGATTTAATTCAAGTTTTCTGGAGACTC TGAACCTTTCTGGTTGTTCAAATATCAAGAAGTGCCCAGAGACTGCAAGGAAACTGACATATTTAAATTTAAATGAGACTGCTGTTGAAGAGCTTCCCCA ATCAATTGGGGAACAAAGTGGACTTGTTGCGTTGAATTTGAAAAACTGCAAACACCTGGTTAATCTTCCAGAAAACATTTATTTGTTGAAATCTCTTCTC GTAGCTGACTTCTCTGGCTGCTCATCTATCAGCAGGCTTCCTGATTTTTCGAGGAATATAAGATACTTGTACTTGAATGGAACTGCAATAGAAGAACTGC CATCTTCAATTGGTGGTCTAAGGGAACTCATTTATTTAGATCTAGTTGGCTGCAACTTGCTAAAGAATCTGCCGAGTGCGGTTTCTAAGTTGGGATGCCT TAAAAAACTTGATCTTTCCGGTTGCTCAAGTATCACGGAGTTTCCAAAGGTTTCTAATACTATAAAGGAGCTGTATTTAAATGGGACAGCAATACGAGAG ATTCCCTCTTCAATAGAATGTTTGTTTGATCTTGCTGAATTGCACCTGCGAAACTGCAAACAATTTGAGATTCTTCCAAGCGGCATCTGCAAGTTGAGAA AACTGGAGAGGCTTAATCTCTCAGGTTGCGTCCAATTTCGGAATTTTCCAGAAGTTTTGGAGCCGATGGTATGTTTGAGATATCCCTATTTAGAGCAGAC AAGCATAACAGAGTTGCCTTCACCGATTGGAAATCTGATGGGACTTGCCTGCTTGGAAGTGGGAAACTGCAAATATCTAAAAGACATCGAATGTCTTGGT GACTTGCAAATGCCCGAGAGATGCGTGGATTTAGATTGTTTGCGTAAGCTAAATCTAGATGGTTGCTGTCTATCGGAAGTGCCGGACAGTCTTGGTCTTT TACCGTCACTGGAAGTGTTAGATCTAAGTGGAAACAATTTTCAGACTATACCTATAAGCATCAATAAACTCTTTGAGTTGCAATATCTAGGATTAAGGAA TTGCATGAGACTTCAATCATTACCGGAGCTTCCACCACGGCTATCAAAGTTGGATGCAGACAATTGCGAGAGGTTGCATTATCTAGTATCAAGCTCATCA ACTGTAGTTGAGGGGAACATTTTTGATTTCATTTTCACTAATTGCTCGAGATCGCGTTGGTTCAATCAAATCTTGGCGTACTCATTATTGAAATTTCGAC TTTACACCAAAAGGTTATACCATCAGCTGCCCGATGTTCCAGAAGGGGCATGTAGTTTCTGCCTCCCTGCAGATGCGATTCCGGAGTGGTTTAGCCATCA AAGTTGGGGATCTACAGTAACATTCCAGCTATCTTCACATTGGGCTAATAGCCAGTTCTTGGGTTTCTCTCTTTGCGCTGTCATTGCATTTTATCGTGTC AGCTATGGTTTGCAAGTTAAATGCACATATCACTTCCGCAATGAGCACGGTGATAGCCATGATCTCTATTGTTATCTCCATGGTTGGTATGATGAGAAGC AAATCGACTCAACACATATATTGGTGGGGTTTGATCCCTGTGTGGTTGCCAAAGAAGATTATATGTTTAATGAATACAGTGAGGTCTCTGTTGAGTTCCA ACTGGAAGATATAAACGGCAATCTCTTAGCATTAGATAAAGTATATGAGTGTGGGGTTCGTCTACTGTATGAAGATGGGATACATCCCTTTGATTTGATC ATGCCAGGCTCCTCTCGTTTTCATCATCTGGATCGAGATGGATTGGAAGCAAGGTTCCAAGCCAAGAGAGCAAGGTTCCAAGCCAACAGAGGGGAGGATT CTTCTATCATGCGTAGGACGTATGAATTATTGGATTTTAAACTTCATTTCAAAAGGTTCAGATTACCCCGGCGTGTGGGGGGGTCCTATGTTCAAGCATC AGCATCTAGTTTCTACCTTCTTGGAGATGTGAGTCCGGAGTGGTTTAGCCATCAAAGTTGGGGATCAATAGTAACATTCCAGCTATCTTCATATCGTGAT AGCAGCGAGTTCTTGGGTTTCTGTCTTTGCGCTGTCATTGCATCTTATTCTTTCAACTTTGAGTTGAAAGTTAAATGCACATATCACTTCCGCAATGAGC ACGGTGATAGCCATGATCTCTATTGCTATCTCCATGAGAAGTTTGGTGAGAGGCGCATCTACTCAGATCTTATATTTGTGGGATTTGATCCCTGTTTGGT TGCCAAAGAAAAGGATATGTTTAGTGAATATAGTGAGGTCTCAATTGAATTCCAACCGGTAGAAACGATTGGTAATTTCAATAGCTTACTATTAGATCGT TATCAAGTGGTTGAGTGTGGGGTTCGTCTATTGCATGCCGAGAGAGCAATGTTGCCAGACAGTGACGATTGGGGTAATGGTTTTGACGATGTTACTCATA AGTTATTATTTTGA
AA sequence Show only first row Show all	>Potri.019G070479.1 pacid=42773454 polypeptide=Potri.019G070479.1.p locus=Potri.019G070479 ID=Potri.019G070479.1.v4.1 annot-version=v4.1 MQSAPSSWPRSLSEELRYLHWDGYPLTSLPSNFRPQNLVEINLSCSKVNQLWRGDQNLVNLKDVNLSNCEHITFMPDLSKARNLERLNLQFCTSLVKFPS SVQHLDKLVDLDLRGCKRLINLPSRFNSSFLETLNLSGCSNIKKCPETARKLTYLNLNETAVEELPQSIGEQSGLVALNLKNCKHLVNLPENIYLLKSLL VADFSGCSSISRLPDFSRNIRYLYLNGTAIEELPSSIGGLRELIYLDLVGCNLLKNLPSAVSKLGCLKKLDLSGCSSITEFPKVSNTIKELYLNGTAIRE IPSSIECLFDLAELHLRNCKQFEILPSGICKLRKLERLNLSGCVQFRNFPEVLEPMVCLRYPYLEQTSITELPSPIGNLMGLACLEVGNCKYLKDIECLG DLQMPERCVDLDCLRKLNLDGCCLSEVPDSLGLLPSLEVLDLSGNNFQTIPISINKLFELQYLGLRNCMRLQSLPELPPRLSKLDADNCERLHYLVSSSS TVVEGNIFDFIFTNCSRSRWFNQILAYSLLKFRLYTKRLYHQLPDVPEGACSFCLPADAIPEWFSHQSWGSTVTFQLSSHWANSQFLGFSLCAVIAFYRV SYGLQVKCTYHFRNEHGDSHDLYCYLHGWYDEKQIDSTHILVGFDPCVVAKEDYMFNEYSEVSVEFQLEDINGNLLALDKVYECGVRLLYEDGIHPFDLI MPGSSRFHHLDRDGLEARFQAKRARFQANRGEDSSIMRRTYELLDFKLHFKRFRLPRRVGGSYVQASASSFYLLGDVSPEWFSHQSWGSIVTFQLSSYRD SSEFLGFCLCAVIASYSFNFELKVKCTYHFRNEHGDSHDLYCYLHEKFGERRIYSDLIFVGFDPCLVAKEKDMFSEYSEVSIEFQPVETIGNFNSLLLDR YQVVECGVRLLHAERAMLPDSDDWGNGFDDVTHKLLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17680			disease resistance protein (TI...		Potri.019G070479 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Potri.019G070300 [exp]	1.00	0.9473
AT5G17680			disease resistance protein (TI...		Potri.019G069600 [exp]	1.41	0.9470
AT1G03370			C2 calcium/lipid-binding and G...		Potri.016G003900 [exp]	1.73	0.8928
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G044200 [exp]	3.87	0.8811
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G047200 [exp]	4.00	0.8832
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G047300 [exp]	4.24	0.8581
AT3G21180		ATACA9, ACA9	autoinhibited Ca\(2+\)-ATPase ...		Potri.010G250800 [exp]	6.92	0.8010	ACA9.1
AT1G18270			ketose-bisphosphate aldolase c...		Potri.015G037000 [exp]	9.38	0.8274
AT1G53440			Leucine-rich repeat transmembr...		Potri.001G386300 [exp]	9.94	0.8398
AT1G67310	CAMTA		Calmodulin-binding transcripti...		Potri.003G170600 [exp]	10.48	0.8350

Compare expression of checked genes

Potri.019G070479 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.