Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53390 446 / 3e-153 O-acyltransferase (WSD1-like) family protein (.1) AT3G49190 419 / 2e-142 O-acyltransferase (WSD1-like) family protein (.1) AT3G49200 410 / 2e-139 O-acyltransferase (WSD1-like) family protein (.1) AT5G16350 405 / 2e-137 O-acyltransferase (WSD1-like) family protein (.1) AT5G12420 395 / 2e-133 O-acyltransferase (WSD1-like) family protein (.1) AT3G49210 394 / 2e-132 O-acyltransferase (WSD1-like) family protein (.1) AT5G53380 387 / 2e-130 O-acyltransferase (WSD1-like) family protein (.1) AT5G22490 377 / 1e-126 O-acyltransferase (WSD1-like) family protein (.1) AT2G38995 374 / 3e-125 O-acyltransferase (WSD1-like) family protein (.1), O-acyltransferase (WSD1-like) family protein (.2) AT1G72110 367 / 2e-122 O-acyltransferase (WSD1-like) family protein (.1), O-acyltransferase (WSD1-like) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G070975 [exp] 812 / 0 AT5G53390 427 / 4e-146 O-acyltransferase (WSD1-like) family protein (.1) Potri.012G014200 [exp] 498 / 3e-173 AT5G53390 559 / 0.0 O-acyltransferase (WSD1-like) family protein (.1) Potri.001G304600 [exp] 237 / 4e-72 AT3G49200 263 / 4e-82 O-acyltransferase (WSD1-like) family protein (.1) Potri.017G010500 [exp] 179 / 1e-50 AT3G49190 216 / 2e-64 O-acyltransferase (WSD1-like) family protein (.1) Potri.013G085101 [exp] 161 / 7e-44 AT3G49190 182 / 2e-51 O-acyltransferase (WSD1-like) family protein (.1) Potri.007G139600 [exp] 156 / 3e-42 AT3G49190 197 / 4e-57 O-acyltransferase (WSD1-like) family protein (.1) Potri.017G010300 [exp] 152 / 2e-40 AT3G49190 182 / 2e-51 O-acyltransferase (WSD1-like) family protein (.1) Potri.017G010700 [exp] 150 / 1e-39 AT3G49190 196 / 1e-56 O-acyltransferase (WSD1-like) family protein (.1) Potri.007G139501 [exp] 44 / 0.0001 AT5G53390 59 / 4e-10 O-acyltransferase (WSD1-like) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009718 [exp] 468 / 2e-161 AT3G49200 532 / 0.0 O-acyltransferase (WSD1-like) family protein (.1) Lus10004008 [exp] 452 / 3e-155 AT5G53390 475 / 2e-164 O-acyltransferase (WSD1-like) family protein (.1) Lus10027887 [exp] 204 / 1e-59 AT5G53390 262 / 5e-82 O-acyltransferase (WSD1-like) family protein (.1) Lus10030257 [exp] 180 / 8e-53 AT5G53390 202 / 2e-61 O-acyltransferase (WSD1-like) family protein (.1) Lus10017718 [exp] 150 / 1e-39 AT3G49190 187 / 4e-53 O-acyltransferase (WSD1-like) family protein (.1) Lus10033678 [exp] 145 / 7e-38 AT3G49190 166 / 2e-45 O-acyltransferase (WSD1-like) family protein (.1) Lus10017721 [exp] 141 / 2e-36 AT3G49210 170 / 5e-47 O-acyltransferase (WSD1-like) family protein (.1) Lus10033680 [exp] 133 / 1e-33 AT3G49210 175 / 9e-49 O-acyltransferase (WSD1-like) family protein (.1) Lus10017717 [exp] 129 / 4e-32 AT3G49190 156 / 1e-41 O-acyltransferase (WSD1-like) family protein (.1) Lus10019840 [exp] 117 / 7e-30 AT3G49200 155 / 2e-44 O-acyltransferase (WSD1-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF03007 [poplar] [flax] WES_acyltransf Wax ester synthase-like Acyl-CoA acyltransferase domain CL0149 [poplar] [flax] PF06974 [poplar] [flax] WS_DGAT_C WS/DGAT C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.019G070900.3 pacid=42773698 polypeptide=Potri.019G070900.3.p locus=Potri.019G070900 ID=Potri.019G070900.3.v4.1 annot-version=v4.1 ATGAGGAACCGAGCCATTAAACCAATTCAAACAGCAAAAAATGTTGAGAATGTTCTGAGCATCACTGATGAAGAGCAGCAACCTTTGAGTCCAATGGCTC GAATGTTTCATGAACCCGACTCCAACGTGTACATCATTATCATAATCGGCTTTCAGACCAAAATCAATCCAGAAGTTATGAGAGCAAATTTGGGGAATAC TTTGCTTAAGCATCCTCGTTTCTCTAGTTTGCAGGTTCCCGATGAGAAGAATGGGGGGCAGCTCAAATGGGTTAGAACAGAGGTTGACTTGGACAACCAT GTCAAATTCCCTACAATTGACCCAAATATGGACTTTCCTGATATGTACGTAGAAGATTACGTCTCTAATTTGAGCAAAACTAAGATTAGGATGTCTATAC CTATGTGGGATCTTCATCTCCTCAACATCAAAACATCTAATGCTGAATCCGTAGGCATTCTCCGAGTCCACCACTCCATTGGAGATGGGACGTCTCTCAT GTCACTTTTCATGTCTTTTACCCGCAAGGCATCTGATCCTGAGGCGCTTCCAACATTTCCAATCTCAAAGAAACAGAAACCCTGCAGTTCTAGTGGAGGA CTTCTCCAACATTTCATCAAGCTATTTTCGGTGTTGCTGATATATTGGAATACTTTGGTTGATATCGTTATGTTTTTAATCACAATTTTCTTCTTGGATG ATACAAAAACGCCGCTCAAAGGTCCATTAGGCGTTGGATCTACTCCACGGCGGATTGTTCATCGAACTGTGAGTTTGGAGGATGTTAAGCTAGTCAAGAA TGCCATGAATGCTACAATCAATGATGTGATGGTGGGAGTCACACAAGGAGCTCTATCTCGCTATCTCAATAGAAAATATGGTAAAAATAAGAAAGATGGT GGAGTGGCAGAAGCAAATAGCAATCTTCCTAAGAACATTCGTCTACGAGCAACTTCATTCGTGAATTTAAGGCCACATCTAGTAAATGAAAGTGCTGCTG AAAAGACGAAAAGTAGCAGCAACGTGAGGTTGGGCAAACTGATCGGCTACGTTCTCTTCCCCTTCACCATTGCACTACGAGAGGATGCATTAGATTATGT TCGAAGTGCTAAGGCAACTGGAAAGAGGAAGAAAGCTTCTCTTGAAGCAGTATACACATATTTCATGGCAAAAACATTTCTCAAATTATTTGGTACTAAG TTGGCAAGCTTCCCAACTCAAACTACATTGTGGTTCTCGAACGTGGCTGGTCCCTCAGAAGAAATCACTTTGTATGGCCATCAAGTGGCCTACATAGCTC CAACTTGCTTTGGGCAACCTAATGCTTTAATGATTCATGTTGTGAGTTATGCCAATAAGATGAACATCATCTTATCAGTTGACGAAGGGATAGTTCCTGA TCCTCATCAACTCTGCGATGATCTTGAAGAATCTCTTAAGCTGATCAAAGACGCTGTCATTTGTAAAGGGCTGGTTGATTGTCGTGTTTACTAA
AA sequence Show only first row Show all	>Potri.019G070900.3 pacid=42773698 polypeptide=Potri.019G070900.3.p locus=Potri.019G070900 ID=Potri.019G070900.3.v4.1 annot-version=v4.1 MRNRAIKPIQTAKNVENVLSITDEEQQPLSPMARMFHEPDSNVYIIIIIGFQTKINPEVMRANLGNTLLKHPRFSSLQVPDEKNGGQLKWVRTEVDLDNH VKFPTIDPNMDFPDMYVEDYVSNLSKTKIRMSIPMWDLHLLNIKTSNAESVGILRVHHSIGDGTSLMSLFMSFTRKASDPEALPTFPISKKQKPCSSSGG LLQHFIKLFSVLLIYWNTLVDIVMFLITIFFLDDTKTPLKGPLGVGSTPRRIVHRTVSLEDVKLVKNAMNATINDVMVGVTQGALSRYLNRKYGKNKKDG GVAEANSNLPKNIRLRATSFVNLRPHLVNESAAEKTKSSSNVRLGKLIGYVLFPFTIALREDALDYVRSAKATGKRKKASLEAVYTYFMAKTFLKLFGTK LASFPTQTTLWFSNVAGPSEEITLYGHQVAYIAPTCFGQPNALMIHVVSYANKMNIILSVDEGIVPDPHQLCDDLEESLKLIKDAVICKGLVDCRVY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53390			O-acyltransferase (WSD1-like) ...		Potri.019G070900 [exp]	0	1
AT4G15630			Uncharacterised protein family...		Potri.008G205100 [exp]	1.00	0.9964
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Potri.015G086900 [exp]	5.29	0.9931
AT1G24540		CYP86C1	"cytochrome P450, family 86, s...		Potri.008G183300 [exp]	7.54	0.9891	Pt-CYP86.2
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Potri.001G191400 [exp]	9.16	0.9936
AT5G54630	C2H2ZnF		zinc finger protein-related (....		Potri.004G030800 [exp]	9.48	0.9892
AT4G13840			HXXXD-type acyl-transferase fa...		Potri.001G319200 [exp]	11.13	0.9847
AT2G05100		LHCB2.3, LHCB2....	LIGHT-HARVESTING CHLOROPHYLL B...		Potri.014G165100 [exp]	11.31	0.9895	LHCB2.2,Lhcb2-1
					Potri.002G252200 [exp]	11.61	0.9936
AT4G16515		RGF6	root meristem growth factor 6,...		Potri.001G122600 [exp]	14.86	0.9893
AT3G19320			Leucine-rich repeat (LRR) fami...		Potri.009G098601 [exp]	15.16	0.9885

Compare expression of checked genes

Potri.019G070900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.