Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53390 427 / 4e-146 O-acyltransferase (WSD1-like) family protein (.1) AT3G49190 423 / 8e-144 O-acyltransferase (WSD1-like) family protein (.1) AT3G49200 399 / 6e-135 O-acyltransferase (WSD1-like) family protein (.1) AT3G49210 397 / 6e-134 O-acyltransferase (WSD1-like) family protein (.1) AT5G16350 381 / 5e-128 O-acyltransferase (WSD1-like) family protein (.1) AT5G12420 378 / 8e-127 O-acyltransferase (WSD1-like) family protein (.1) AT5G53380 374 / 2e-125 O-acyltransferase (WSD1-like) family protein (.1) AT5G22490 370 / 1e-123 O-acyltransferase (WSD1-like) family protein (.1) AT2G38995 360 / 9e-120 O-acyltransferase (WSD1-like) family protein (.1), O-acyltransferase (WSD1-like) family protein (.2) AT1G72110 352 / 7e-117 O-acyltransferase (WSD1-like) family protein (.1), O-acyltransferase (WSD1-like) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G070900 [exp] 801 / 0 AT5G53390 446 / 2e-153 O-acyltransferase (WSD1-like) family protein (.1) Potri.012G014200 [exp] 494 / 6e-172 AT5G53390 559 / 0.0 O-acyltransferase (WSD1-like) family protein (.1) Potri.001G304600 [exp] 205 / 4e-60 AT3G49200 263 / 4e-82 O-acyltransferase (WSD1-like) family protein (.1) Potri.017G010500 [exp] 162 / 2e-44 AT3G49190 216 / 2e-64 O-acyltransferase (WSD1-like) family protein (.1) Potri.007G139600 [exp] 152 / 2e-40 AT3G49190 197 / 4e-57 O-acyltransferase (WSD1-like) family protein (.1) Potri.017G010300 [exp] 146 / 2e-38 AT3G49190 182 / 2e-51 O-acyltransferase (WSD1-like) family protein (.1) Potri.013G085101 [exp] 145 / 3e-38 AT3G49190 182 / 2e-51 O-acyltransferase (WSD1-like) family protein (.1) Potri.017G010700 [exp] 139 / 4e-36 AT3G49190 196 / 1e-56 O-acyltransferase (WSD1-like) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009718 [exp] 454 / 3e-156 AT3G49200 532 / 0.0 O-acyltransferase (WSD1-like) family protein (.1) Lus10004008 [exp] 435 / 1e-148 AT5G53390 475 / 2e-164 O-acyltransferase (WSD1-like) family protein (.1) Lus10027887 [exp] 194 / 5e-56 AT5G53390 262 / 5e-82 O-acyltransferase (WSD1-like) family protein (.1) Lus10030257 [exp] 168 / 3e-48 AT5G53390 202 / 2e-61 O-acyltransferase (WSD1-like) family protein (.1) Lus10017718 [exp] 133 / 1e-33 AT3G49190 187 / 4e-53 O-acyltransferase (WSD1-like) family protein (.1) Lus10017721 [exp] 125 / 4e-31 AT3G49210 170 / 5e-47 O-acyltransferase (WSD1-like) family protein (.1) Lus10033678 [exp] 124 / 2e-30 AT3G49190 166 / 2e-45 O-acyltransferase (WSD1-like) family protein (.1) Lus10017717 [exp] 120 / 5e-29 AT3G49190 156 / 1e-41 O-acyltransferase (WSD1-like) family protein (.1) Lus10033680 [exp] 118 / 2e-28 AT3G49210 175 / 9e-49 O-acyltransferase (WSD1-like) family protein (.1) Lus10019840 [exp] 105 / 1e-25 AT3G49200 155 / 2e-44 O-acyltransferase (WSD1-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF03007 [poplar] [flax] WES_acyltransf Wax ester synthase-like Acyl-CoA acyltransferase domain CL0149 [poplar] [flax] PF06974 [poplar] [flax] WS_DGAT_C WS/DGAT C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.019G070975.1 pacid=42773558 polypeptide=Potri.019G070975.1.p locus=Potri.019G070975 ID=Potri.019G070975.1.v4.1 annot-version=v4.1 ATGACGATCCAAGCCATTAAACCAATTAAAACAACAAAAAATGTTGACATTACTTCGAGCAGTGCAGAAGAAGAGCAACCTCTGAGTCCAGTGGCTCGAA TGTTTCATGAATCCGACTCCACCGTGTACATCATTGTCATCATCGGCTTCGAGACCCAACTCAATCCGGAAGTTATTAAAGCAAACTTGGGGCACACTTT GCTCTCGCAACCTCGTTTCTGTAGTTTACAGCTTCCAGATGAGAAACGTGGTGGCGAGCTCAAATGGGTTAGAACAGTGGTCGACTTGGACAACCATGTC AAAGTCCCTACACTTGACCCAAACATGGACTCTCCTGATATGTTCGTGGAAGATTACGTCTCTAATTTGAGCAAAACAGGGATTAGCATGTCAATACCTA TGTGGGATCTCCATCTCCTCAATATCAAAACTTCTGATGCTGAATCCGTAGGCGTTCTCCGAGTCCACCACTCTCTTGGTGATGGCACGTCTCTCATGAC ACTTTTCATGTCTTGTACCCGCAAAGTATCTGATCCTGAGGCACTTCCGTCGCTTCCAATGAACATGAAAAAGAAACATGGCAGTTCTAGTGGAGGGTTT CTCCAATATTTCATCAAGCTTTTTTCTGTGTTGTTGTTATATTGGAATACTTTTGTTGATGTTGTAATGTTTTTTATCACAACTTTCTACTTGGATGATA CGAAAACGCCCCTCAAAGGTCCATTAGGCGTTGCATCTACTCCACGGCGGATTGTTCATCGAACTGTGAGTTTGGAGGATGTTAAGCTGGTCAAGAATGC CATGAATGTTACAGTCAATGATGTGATGGTGGGAGTCACAGAAGCAGCTCTAACTCGAAATCTAAATAGAAAATACGGTAAAATTAAGGAGGAGGCAGGA GGGGCAGAAGGGCATAACAATCTTCCTAAGAACATTCGTCTAAGAGCAACTCATTTCGTGAATTTAAGGCCATATCTAGTAAATGAAGATGTTTCTGAAA TGATAAAAAGTAGCAGCAAAGTGAAGCTGGGCAACCTGATCGGCTACGTTATCTTCCCCTTCACCATTGGATTACGAGAGGATGTATTAGATCATGTTCG AAGTGCCAAGGCAACAGGAAAGAGGAAGAAAGCTTCTCTTGAAGCATTATACACATATTTAATGGCAAAATTCTTTATCAAATTCTTCAGTGCTAAGTGG GCAAGCTTTCCAACTCAAACTACATTGTGGTACTCAAACGTGCCTGGTCCTCAAGAAGAAGTTACTTGTTTCGGCCATCAAGTGGCCTACGTAGCTCCCA CCTGCTATGGGCAACCTAATGCATTAATGATTCATGTTGTGAGTTATGTCAACAAAATGAAAATCATCGTATCAGTTGACGAAGGGGTAGTTCCTGATCC TCATCAAATCTGCGACGATATCGAAGAATCTCTTAAGCTGATCAAGAATGCTGTCATAGAGAAAGGGCTGGTTGATTGTTATGATTACTAA
AA sequence Show only first row Show all	>Potri.019G070975.1 pacid=42773558 polypeptide=Potri.019G070975.1.p locus=Potri.019G070975 ID=Potri.019G070975.1.v4.1 annot-version=v4.1 MTIQAIKPIKTTKNVDITSSSAEEEQPLSPVARMFHESDSTVYIIVIIGFETQLNPEVIKANLGHTLLSQPRFCSLQLPDEKRGGELKWVRTVVDLDNHV KVPTLDPNMDSPDMFVEDYVSNLSKTGISMSIPMWDLHLLNIKTSDAESVGVLRVHHSLGDGTSLMTLFMSCTRKVSDPEALPSLPMNMKKKHGSSSGGF LQYFIKLFSVLLLYWNTFVDVVMFFITTFYLDDTKTPLKGPLGVASTPRRIVHRTVSLEDVKLVKNAMNVTVNDVMVGVTEAALTRNLNRKYGKIKEEAG GAEGHNNLPKNIRLRATHFVNLRPYLVNEDVSEMIKSSSKVKLGNLIGYVIFPFTIGLREDVLDHVRSAKATGKRKKASLEALYTYLMAKFFIKFFSAKW ASFPTQTTLWYSNVPGPQEEVTCFGHQVAYVAPTCYGQPNALMIHVVSYVNKMKIIVSVDEGVVPDPHQICDDIEESLKLIKNAVIEKGLVDCYDY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53390			O-acyltransferase (WSD1-like) ...		Potri.019G070975 [exp]	0	1
AT1G54730			Major facilitator superfamily ...		Potri.005G040000 [exp]	3.00	0.9182
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Potri.010G099200 [exp]	6.16	0.9440
AT5G56840	MYB		myb-like transcription factor ...		Potri.006G150300 [exp]	7.07	0.8952
AT2G03390			uvrB/uvrC motif-containing pro...		Potri.010G161600 [exp]	10.53	0.9312
AT5G53580		AtPLR1	pyridoxal reductase 1, NAD(P)-...		Potri.015G006900 [exp]	10.95	0.9284
AT5G04140		GLS1, GLUS, GLU...	FERREDOXIN-DEPENDENT GLUTAMATE...		Potri.006G038400 [exp]	15.55	0.9071	Pt-GLU1.2
AT2G43945			unknown protein		Potri.013G084300 [exp]	17.66	0.9176
AT2G43010	bHLH	SRL2, PIF4, AtP...	phytochrome interacting factor...		Potri.005G207200 [exp]	25.09	0.9154
AT5G09820			Plastid-lipid associated prote...		Potri.001G309300 [exp]	25.09	0.9037
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Potri.014G075200 [exp]	25.09	0.9086	Pt-ANL2.2

Compare expression of checked genes

Potri.019G070975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.