Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10080 125 / 3e-33 unknown protein AT4G13530 119 / 2e-31 unknown protein AT4G00355 50 / 7e-07 ATI2 ATG8-interacting protein 2, unknown protein AT2G45980 41 / 0.0008 ATI1 ATG8-interacting protein 1, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G099200 [exp] 422 / 2e-148 AT4G13530 116 / 3e-30 unknown protein Potri.014G086000 [exp] 46 / 2e-05 AT4G00355 200 / 4e-63 ATG8-interacting protein 2, unknown protein Potri.002G160700 [exp] 42 / 0.0004 AT4G00355 217 / 8e-70 ATG8-interacting protein 2, unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030342 [exp] 245 / 4e-79 AT4G13530 176 / 1e-53 unknown protein Lus10041074 [exp] 228 / 2e-72 AT4G13530 170 / 2e-50 unknown protein Lus10003531 [exp] 220 / 6e-67 AT4G13530 186 / 7e-55 unknown protein Lus10002932 [exp] 208 / 5e-65 AT4G13530 176 / 7e-54 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.019G071300.1 pacid=42773299 polypeptide=Potri.019G071300.1.p locus=Potri.019G071300 ID=Potri.019G071300.1.v4.1 annot-version=v4.1 ATGGAAGGAGATGCTGTTACTGACTTTCAAGACTGGGAACTACTAGCCAACTCGGACTCGGACTCGGTCCTGGCTGACTCACCCAACTCGGTGGCCAATT CTTCGAGGAGTTTTCATGAGATTGAGGCTGATACAGAAGGTATGTTCAGGTCAGATTACTTTTCTCTTGAAAATGATAGTAGACATGTTAAAGCTGCTCT TGATGCTAGTGAAGAAGGTTCCGTTGAGTCGGATAATCCGAGTTGGATCGATCCTGGCTCAGAAACTCGGTTCCAGAGGAGGAATTCTGGTGAGTCATGG CCTGATTCGGGTAGTGATCGATCTGATGATCGCAAATCAAGTGACTTTGATGTGAAAAATGAATTGGGTTTTGTGGAAAATGAAAGGACTGGCGTGGGAT TTCAAGGGATTGGAGAAATTGAGGCTAAAGAAGGGAAGCTTGAGTCACTCGAGCGTGAAGCTAGCAACTTTCAAGGGAAAAGCGAAGTGGGTCTTGTAGA GACCTTGAAAGATCAAGTGGGTTTGGAAGGATTCGGGGAACAAGGTAAGGATAAGGAATTGATTAAGTTCTGGTCTGATTCTGATGGTGATAATTTGGTT TTTGGTGGTCTTGGGAAGGATCAAGCTGGGTCTGAGATTCTGGGTGAATCTGAAGGTGGAAATGTGTCCAAAGAGGTAAGTTTGGGTGTTGTTGCGGTCA GAGATACAAAGCCTGGTGATGAGGGGGAGAAGAGGAAGGTGGTGGTGTGGTGGAAGGTTCCTTTTGAGGTGTTGAGGTATTGTGTTTTCAGGTTGAATCC TGTTTGGTCTGTCTCTATGGCTGCCGCTGTGATGGGATTTGTTATCTTGGGACGGAGATTGTATAAGATGAGGCGCAAGACAAAGAGCTTGCAGCTTAAG GTTACAGTGGATGACAAGAAGGTATCACAGTTCATGACTCGTGCTACACGTCTGAACGAAGCATTTTCTGTTGTGAGAAGGGTCCCCATTGTTCGGCCCC TATTGCCAGCAGCTGGGGTGAATCCATGGCCTGTTATGAGTTTGAGATAG
AA sequence Show only first row Show all	>Potri.019G071300.1 pacid=42773299 polypeptide=Potri.019G071300.1.p locus=Potri.019G071300 ID=Potri.019G071300.1.v4.1 annot-version=v4.1 MEGDAVTDFQDWELLANSDSDSVLADSPNSVANSSRSFHEIEADTEGMFRSDYFSLENDSRHVKAALDASEEGSVESDNPSWIDPGSETRFQRRNSGESW PDSGSDRSDDRKSSDFDVKNELGFVENERTGVGFQGIGEIEAKEGKLESLEREASNFQGKSEVGLVETLKDQVGLEGFGEQGKDKELIKFWSDSDGDNLV FGGLGKDQAGSEILGESEGGNVSKEVSLGVVAVRDTKPGDEGEKRKVVVWWKVPFEVLRYCVFRLNPVWSVSMAAAVMGFVILGRRLYKMRRKTKSLQLK VTVDDKKVSQFMTRATRLNEAFSVVRRVPIVRPLLPAAGVNPWPVMSLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10080			unknown protein		Potri.019G071300 [exp]	0	1
AT4G16430	bHLH	bHLH003, INU3	basic helix-loop-helix (bHLH) ...		Potri.002G042000 [exp]	15.16	0.8291
AT1G35460	bHLH	bHLH080	basic helix-loop-helix (bHLH) ...		Potri.013G107500 [exp]	23.06	0.8139
AT3G07790			DGCR14-related (.1)		Potri.014G164200 [exp]	52.44	0.8071
AT3G09670			Tudor/PWWP/MBT superfamily pro...		Potri.006G131800 [exp]	55.96	0.7885
AT4G02340			alpha/beta-Hydrolases superfam...		Potri.014G127200 [exp]	82.35	0.7781
AT1G61040		VIP5	vernalization independence 5, ...		Potri.004G039500 [exp]	84.07	0.7759
AT3G06780			glycine-rich protein (.1)		Potri.008G211000 [exp]	92.46	0.7845
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Potri.004G042200 [exp]	103.44	0.7675
AT2G01060	GARP		myb-like HTH transcriptional r...		Potri.016G001100 [exp]	116.18	0.7419
AT2G15270			unknown protein		Potri.001G300300 [exp]	121.49	0.7627

Compare expression of checked genes

Potri.019G071300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.