Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02760 879 / 0 Class II aaRS and biotin synthetases superfamily protein (.1) AT3G46100 149 / 3e-38 ATHRS1 Histidyl-tRNA synthetase 1 (.1) AT3G59410 124 / 8e-29 ATGCN2, GCN2 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 2, protein kinase family protein (.1.2) AT5G03406 91 / 5e-20 Class II aaRS and biotin synthetases superfamily protein (.1) AT2G04842 45 / 0.0002 EMB2761 EMBRYO DEFECTIVE 2761, threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G124400 [exp] 142 / 1e-35 AT3G46100 636 / 0.0 Histidyl-tRNA synthetase 1 (.1) Potri.007G128300 [exp] 123 / 2e-28 AT3G59410 1610 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 2, protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041073 [exp] 1128 / 0 AT3G02760 973 / 0.0 Class II aaRS and biotin synthetases superfamily protein (.1) Lus10030341 [exp] 1103 / 0 AT3G02760 972 / 0.0 Class II aaRS and biotin synthetases superfamily protein (.1) Lus10014422 [exp] 146 / 7e-37 AT3G46100 758 / 0.0 Histidyl-tRNA synthetase 1 (.1) Lus10023925 [exp] 144 / 2e-36 AT3G46100 760 / 0.0 Histidyl-tRNA synthetase 1 (.1) Lus10014895 [exp] 96 / 7e-21 AT3G59410 515 / 1e-173 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 2, protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0458 [poplar] [flax] IIaaRS-ABD PF03129 [poplar] [flax] HGTP_anticodon Anticodon binding domain CL0040 [poplar] [flax] tRNA_synt_II PF13393 [poplar] [flax] tRNA-synt_His Histidyl-tRNA synthetase
Representative CDS sequence Show only first row Show all	>Potri.019G071400.2 pacid=42774079 polypeptide=Potri.019G071400.2.p locus=Potri.019G071400 ID=Potri.019G071400.2.v4.1 annot-version=v4.1 ATGGCAGCATATAGAGATGAGCTAAAAATGATCATCATTGGAGGCAAAGGCTCTGCTTTAACCTCCACTTCCGTCTACACCATCGCCACAGGCCACGCTC TGGTACGCATTGACTCATCAGCACTCGATAGACTCACTAATCAAAACAGAAACCCTCAGAAACCACTCCAGTCGATCTCTCTAATCCCCAACAAAGCCTC GAACCTAATTGAAACTCGCGCTTACCTTACTGTCCTCCTCAATAAGCTCCTTCACTACACGAATTCCTCTAATGTACGTACGTTTCTCCCTAATTTGATC GCAGAAACCCTAAATTCGAATAAATTTGGAAGTGAAGCCCAAGGGTTGGATGTTGAGGTGACTGAGGAGGAGAGACTTGTCATTGAGGTATCCAATGCGG AATTGTATGGGGTTTGTGCGATTTTGGATCATGAAGGGATGGGGTTGGGTGTTGTTGATGATGCCGTTGCTGCGTTGTCGTGTGAGGCGGTGAAAGCAGA TGCCAGGTCGTTTGACGGTGTGGATAGTGGTGATGGGTTTGTTGATAAGGAGGCAGCTACGGTTGCGAGTGATATGAAGGTTTTGCTTGTTGGGTATGAT TCGAATAAGAGAGGAGAGAGTGAGGCGGTTTCGGAAATTCCGAAAGTTAATGGGAGGTTGAGGGAGGTGGTGAAGGCGTTGCATACAATGGTTCGAGTTG AGTTGAATTCAGGGGTGAAAGGATCGAGCGGCGGGTCTGGAAAGGCAGTGGGGACCACGGTGTCAGGGTTGGCAGTGGCGTTGCTGTTTTTGGGGAAGAG TAGTTTGTGTCGGGTTAAAATGAATTTGGATGTGACGGGGAATGAGGTTTTGAGAAGCGGGTTGGTGAGTTTGTATGAGAAGAAATGTCCTAGCAGGGAT GATTTGATGAACGGATACAAGGCAGTTACCGATTTGCTTGTCGAGGAGGATTATGTAATGTTTGGGTATGGAGTGTATGGTTTGTTGGGGATTGTATGGA AGATTGTTGCGTGGGAGGAGATAACTGCGTTTTTTGCTCTTGAGGGTGTTGAGTTGATGAGTGGAATTGGTGGTCAAGTGAATGGAGGGGAGGCAAAAGT CGACAAGAAAAGTGAGAAGAAGAAGAAAAAGAAGACAGTTTTAGGGAAAGGGACTAGTGTGATTGTGCAGTTAATTAAAGATAGGTTGCAGATTGTTGGA GGGGGTTCTGGTGATAGTTTGGACATATTAGAGAAATGGGTTGAGAATCTTTTGTCCTTTTTTAGCCCAAAGCAACCAGAGTTTGATGAATTCGTGCAGA AAGTGAAGGAGATTGTTGAAAGAAATGAAAGTAGAAGACTTCCTAAGCTTCCAAAGGGCACTCGTGATTTTGCAAATGAACAAATGGTGATAAGAGAAAG AGCATTTTCAATCATAGCAGATGTTTTCAAGAGGCATGGTGCCACTTCCCTTGACACTCCTGCTTTTGAATTGAGAGAGACTCTCATGGGAAAATACGGG GAGGATTCAAAATTAATTTATGATCTCGCTGACCAGGGTGGAGAGCTTTGTTCTCTGCGGTATGACTTGACTGTTCCATTTGCTAGATATGTGGCTATGA ATGGTATCACTTCGTTTAAAAGGTATCAAATAGCTAAGGTATACAGAAGAGATAACCCATCTAAAGGAAGATACCGAGAATTTTATCAGTGTGACTTTGA TATTGCTGGTCAATATGAAGAAATGGGACCAGACTTTGAGATAGTGAAGGTTTTGACAGAATTGCTTGATGAGCTAGACATTGGAGATTATGAGGTTAAA TTAAACCATCGGAAGTTGCTGGATGGTATGTTGGAAATATGTGGAGTGCCTCCTGAAAAATTCGGAACCATTTGTTCAAGTATTGACAAACTGGACAAGC AATCATTTGAGCAGGTTAAGAAAGAAATGGTGGAAGAGAAGGGGTTAGCTGTTGAGACAGCAGACAGAATTGGTACTTTTGTGAAGGAAAAGGATTCTCC TAAGGAATTATTATCAAAGCTTAAACAGGAAGGCAGTGAGTTTTTACAAAACGCTTCTTCTAGTCGTGCACTGGATGAGTTGGAAATTTTGTTTGATGCT CTTGAAAGATCAAAGTGCATTGACAAAGTGGTTTTTGATTTAAGCCTTGCCAGAGGGCTTGATTATTATACCGGAGTCATTTTTGAAGCTGTTTTTAAAG GGACTACACAGGTCGGTTCAATTGCTGCTGGGGGGCGATATGACAACCTTATAGGAATGTTTGGTTCAAAACCAGTTCCAGCTGTTGGGGTCAGTCTTGG TATCGAGCGAGTATTTGCTATAATGGAGCAGCTGCAGAAGGACCGGAATGAGACAACCCGGCCTACTGAAACCCAGGTTCTGCTGGGCATTATGGGAAAC AAAAGTAAAATACCTCTAGCTGCAGAGCTGACCAGTAAGCTGTGGAGTGCCAAGCTGAAAGCTGAATTTGTTGTCAGTACAAGATTTGATAAGATCATTA GCCGCGCAAATGATTCAAAAATCCCATGGATGGTACTCGTCAGGGATAGGGAGCTGGAGACAGGGAAGGTAAAAATAAGGAACCTTGAGACCAAAATAGA GGAAGAGGTACCTTTAAGTGCTTTCGTTGATGAAGTCAAGAATCGATTGAACTTATGA
AA sequence Show only first row Show all	>Potri.019G071400.2 pacid=42774079 polypeptide=Potri.019G071400.2.p locus=Potri.019G071400 ID=Potri.019G071400.2.v4.1 annot-version=v4.1 MAAYRDELKMIIIGGKGSALTSTSVYTIATGHALVRIDSSALDRLTNQNRNPQKPLQSISLIPNKASNLIETRAYLTVLLNKLLHYTNSSNVRTFLPNLI AETLNSNKFGSEAQGLDVEVTEEERLVIEVSNAELYGVCAILDHEGMGLGVVDDAVAALSCEAVKADARSFDGVDSGDGFVDKEAATVASDMKVLLVGYD SNKRGESEAVSEIPKVNGRLREVVKALHTMVRVELNSGVKGSSGGSGKAVGTTVSGLAVALLFLGKSSLCRVKMNLDVTGNEVLRSGLVSLYEKKCPSRD DLMNGYKAVTDLLVEEDYVMFGYGVYGLLGIVWKIVAWEEITAFFALEGVELMSGIGGQVNGGEAKVDKKSEKKKKKKTVLGKGTSVIVQLIKDRLQIVG GGSGDSLDILEKWVENLLSFFSPKQPEFDEFVQKVKEIVERNESRRLPKLPKGTRDFANEQMVIRERAFSIIADVFKRHGATSLDTPAFELRETLMGKYG EDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGITSFKRYQIAKVYRRDNPSKGRYREFYQCDFDIAGQYEEMGPDFEIVKVLTELLDELDIGDYEVK LNHRKLLDGMLEICGVPPEKFGTICSSIDKLDKQSFEQVKKEMVEEKGLAVETADRIGTFVKEKDSPKELLSKLKQEGSEFLQNASSSRALDELEILFDA LERSKCIDKVVFDLSLARGLDYYTGVIFEAVFKGTTQVGSIAAGGRYDNLIGMFGSKPVPAVGVSLGIERVFAIMEQLQKDRNETTRPTETQVLLGIMGN KSKIPLAAELTSKLWSAKLKAEFVVSTRFDKIISRANDSKIPWMVLVRDRELETGKVKIRNLETKIEEEVPLSAFVDEVKNRLNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02760			Class II aaRS and biotin synth...		Potri.019G071400 [exp]	0	1
AT3G01160			unknown protein		Potri.005G108800 [exp]	1.41	0.8632
AT1G31970		STRS1	STRESS RESPONSE SUPPRESSOR 1, ...		Potri.003G098800 [exp]	3.46	0.8523
AT1G33520		MOS2	modifier of snc1, 2, D111/G-pa...		Potri.003G104200 [exp]	3.74	0.8620
AT5G38720			unknown protein		Potri.017G108700 [exp]	4.89	0.8472
AT3G55340		PHIP1	phragmoplastin interacting pro...		Potri.010G209701 [exp]	5.91	0.8334
AT5G38720			unknown protein		Potri.004G106900 [exp]	6.00	0.8365
AT5G09880			Splicing factor, CC1-like (.1)		Potri.005G148100 [exp]	6.70	0.8376
AT5G17900			microfibrillar-associated prot...		Potri.019G039900 [exp]	7.34	0.8276
AT3G02490			Pentatricopeptide repeat (PPR)...		Potri.004G108000 [exp]	7.74	0.8038
AT4G01560		MEE49	maternal effect embryo arrest ...		Potri.014G108400 [exp]	8.06	0.8101

Compare expression of checked genes

Potri.019G071400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.