Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-HSDH.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19710 1470 / 0 AK-HSDHII, AK-HSDH ,AK-HSDH II aspartate kinase-homoserine dehydrogenase ii (.1.2) AT1G31230 1444 / 0 AK-HSDHI ,AK-HSDH I aspartate kinase-homoserine dehydrogenase i (.1) AT5G21060 189 / 7e-53 Glyceraldehyde-3-phosphate dehydrogenase-like family protein (.1.2.3) AT5G14060 177 / 6e-47 CARAB-AK-LYS Aspartate kinase family protein (.1.2) AT3G02020 176 / 2e-46 AK3 aspartate kinase 3 (.1) AT5G13280 175 / 3e-46 AK1, AK-LYS1 aspartate kinase 1 (.1) AT3G18680 45 / 0.0001 Amino acid kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G099500 [exp] 1691 / 0 AT4G19710 1425 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2) Potri.004G196200 [exp] 197 / 1e-55 AT5G21060 509 / 0.0 Glyceraldehyde-3-phosphate dehydrogenase-like family protein (.1.2.3) Potri.014G145700 [exp] 178 / 2e-47 AT5G14060 805 / 0.0 Aspartate kinase family protein (.1.2) Potri.002G236800 [exp] 173 / 1e-45 AT3G02020 845 / 0.0 aspartate kinase 3 (.1) Potri.005G057700 [exp] 45 / 0.0001 AT3G18680 467 / 1e-166 Amino acid kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030339 [exp] 1506 / 0 AT4G19710 1415 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2) Lus10041071 [exp] 1479 / 0 AT4G19710 1373 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2) Lus10003073 [exp] 198 / 7e-56 AT5G21060 553 / 0.0 Glyceraldehyde-3-phosphate dehydrogenase-like family protein (.1.2.3) Lus10034077 [exp] 191 / 3e-53 AT5G21060 561 / 0.0 Glyceraldehyde-3-phosphate dehydrogenase-like family protein (.1.2.3) Lus10041523 [exp] 168 / 6e-44 AT5G14060 824 / 0.0 Aspartate kinase family protein (.1.2) Lus10012568 [exp] 168 / 7e-44 AT5G14060 820 / 0.0 Aspartate kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00696 [poplar] [flax] AA_kinase Amino acid kinase family CL0139 [poplar] [flax] GADPH_aa-bio_dh PF00742 [poplar] [flax] Homoserine_dh Homoserine dehydrogenase CL0070 [poplar] [flax] ACT PF01842 [poplar] [flax] ACT ACT domain CL0063 [poplar] [flax] NADP_Rossmann PF03447 [poplar] [flax] NAD_binding_3 Homoserine dehydrogenase, NAD binding domain CL0070 [poplar] [flax] ACT PF13840 [poplar] [flax] ACT_7 ACT domain
Representative CDS sequence Show only first row Show all	>Potri.019G071700.1 pacid=42774092 polypeptide=Potri.019G071700.1.p locus=Potri.019G071700 ID=Potri.019G071700.1.v4.1 annot-version=v4.1 ATGGCATTCTCTGCTGCTTCGATCTCCAATACTTCACGCACTCTCTCTTCTCCTTCAACTACATTTTCTCAACTCAACAACAAGATCTCTCCTTCTCATT TCTCCTCCTCTTTATCTCTTTCTCCTCGCTCTTCTCCCTTCAGGAGGGGTTTTGTTTCCCAGTGGGGAAGAAGGGAGTCTTTGCGCGGCCATGTCTCGAG CTCAGTTAAAGCGGTTTTGGTGGATGAATCCAAGGAAAAGGTTAAACTTCTAAAAGGTGATATGTGGTCGGTTCATAAGTTTGGTGGTACTTGTGTGGGA AGCTCGGAGAGGATTAAGAATGTGGCAGATATCATTTTAAAGGATAGCTCAGAAGGGAAGTTGGTGGTTGTATCGGCCATGTCCAAGGTGACAGATATGA TGTATGATCTCATAAACAAGGCCCAATCACGGGATGATTCCTATCTGTCTGCTGTTGATGCTGTTTTTGAAAAGCATAGATTAACAGCCATGGATCTTAT TGATGGTGATGATCTTGCTAGCTTTTTGTCCCGGTTGCATCATGATATTAATAACCTCAAAGCCATGCTTCGTGCAATATACATAGCTGGTCATGCAACG GAGTCCTTCTCTGACTTTGTTGTAGGACATGGGGAGTTGTGGACTGCTCAGATGTTGTCATATGTTGTTAGAAAGAATGGGCTAGATTGTGAATGGATGG ATACAAGAGAAGTGCTTATTGTAAATCCGTCTGGGTCTAATCAAGTTGATCCTGATTTTGTGGAATCGGAAAAAAGACTTGAAGAGTGGTTCTCTCGACA TCCATCAAAGACAATAGTTGCAACTGGTTTCATAGCCAGTACGCCGCAAAATATTCCCACAACTTTGAAGCGAGATGGAAGTGACTTCTCCGCAGCTATA ATGGGCGCTATGGTGAGGGCTCGCCAAGTCACAATTTGGACAGACGTTGATGGGGTATACAGTGCAGACCCCAGAAAAGTTAGTGAGGCTGTAATACTAC GGACATTGTCTTACCAAGAGGCTTGGGAAATGTCTTATTTTGGGGCAAATGTCTTACATCCCCGCACTATTTTGCCTGTGATGCGATATGACATACCCAT TATGATAAGGAATATTTTTAACCTCTCTGCACCTGGGACAATGATCTGCCGGCCTGCTGAGAATGAAGATGGCCAGAAATTGGAGTCACCTGTCAAAGGT TTTGCAACTATTGACAATGTGGCTCTTGTGAATGTTGAGGGAACTGGAATGGCTGGTGTTCCTGGTACAGCTAGTGCCATTTTTGGTGCTGTCAAAGACG TGGGAGCTAATGTCATTATGATATCACAGGCTAGTAGCGAGCATTCTGTGTGCTTCGCTGTGCCTGAGAAAGAAGTGACAGCTGTTGCTGAGGCTTTGAA GTCTAGATTTCATGAAGCTTTGAATGCTGGGCGTCTTTCCCAGGTTGCAGTCATTCGAAATTGTAGCATTTTAGCAGCAGTTGGCCAGAAAATGGCTAGT ACACCTGGAGTCAGTGCTACTCTTTTCAATGCCCTGGCTAAGGCTAATATTAATGTTCGTGCCATAGCTCAAGGTTGCTCTGAATACAATATTACAGTTG TTATTAAGCGTGAAGATTGTATAAGGGCTTTAAGAGCTGTTCACTCGAGGTTTTATCTCTCAAAGACCACGATAGCAATGGGAATTATTGGACCTGGTTT GATCGGTGCCACATTACTTGACCAGCTCAGGGATCAGGCAGCATTCCTTAAGGAAGATTTTAACATTGATTTGCGCGTTATGGGAATCACTGGCTCAAGA ACAATGCTTTTGAGTGATGTAGAAATTGACTTGTCAAAATGGAGAGAACTTGTAAAGGATAAAGGAGAAGTGGCTGACCTGGAGAAATTCACTCAACATG TGCATGGAAATAATTTTATTCCAAATACTGTTTTGGTAGACTGTACAGCAGACTCTAGTGTTGCAAGTTGTTATCATGATTGGCTGCGGAGAGGAATTCA CGTAATCACCCCAAACAAAAAGGCAAATTCAGGACCTCTTGATCAGTATTCAAAATTGAGAGCTCTGCAAAGGCAATCCTATACGCATTACTTTTATGAA GCAACTGTTGGAGCTGGCCTTCCAATTATTAGCACTTTACGAGGTCTCCTTGAAACTGGGGATAAAATACTGCGCATTGAAGGGATTTTCAGTGGAACTT TGAGTTATATTTTCAACAATTTCATAGGCACGCGAGCATTTAGTGACGTGGTGGCGGAGGCAAAGCAGGCAGGATATACTGAACCTGATCCAAGGGATGA TCTATCTGGAACAGATGTTGCCAGAAAGGTTATCATTCTTGCACGAGAATCTGGTTTAAAGTTGGAGCTTTCTGATATCCCTGTTCAAAGTCTTGTCCCT CAACCACTGAGAGCTAGTGCATCTGTTGAAGAATATATGCAGCGGTTGCCACAATTTGACAGTGAAATGGCTAGGGAGAGACAAGAGGCTGAGGATGCAG GGGATGTCTTGAGATACGTTGGGGTGGTCGATGCGGTGAGTGAAGAAGGGCGTGTTGAGTTGCGAAGATATAAGAAAGATCACCCATTTGCTCAGCTCTC TGGTTCTGATAACATCATAGCTTTCACAACTAAAAGGTATAAAGAACAGCCCCTGATTGTCCGAGGGCCTGGTGCTGGGGCTCAAGTGACAGCTGGTGGA ATATTCAGCGACATATTGCGACTGGCCTCCTATCTTGGTGCTCCATCATAG
AA sequence Show only first row Show all	>Potri.019G071700.1 pacid=42774092 polypeptide=Potri.019G071700.1.p locus=Potri.019G071700 ID=Potri.019G071700.1.v4.1 annot-version=v4.1 MAFSAASISNTSRTLSSPSTTFSQLNNKISPSHFSSSLSLSPRSSPFRRGFVSQWGRRESLRGHVSSSVKAVLVDESKEKVKLLKGDMWSVHKFGGTCVG SSERIKNVADIILKDSSEGKLVVVSAMSKVTDMMYDLINKAQSRDDSYLSAVDAVFEKHRLTAMDLIDGDDLASFLSRLHHDINNLKAMLRAIYIAGHAT ESFSDFVVGHGELWTAQMLSYVVRKNGLDCEWMDTREVLIVNPSGSNQVDPDFVESEKRLEEWFSRHPSKTIVATGFIASTPQNIPTTLKRDGSDFSAAI MGAMVRARQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTILPVMRYDIPIMIRNIFNLSAPGTMICRPAENEDGQKLESPVKG FATIDNVALVNVEGTGMAGVPGTASAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVTAVAEALKSRFHEALNAGRLSQVAVIRNCSILAAVGQKMAS TPGVSATLFNALAKANINVRAIAQGCSEYNITVVIKREDCIRALRAVHSRFYLSKTTIAMGIIGPGLIGATLLDQLRDQAAFLKEDFNIDLRVMGITGSR TMLLSDVEIDLSKWRELVKDKGEVADLEKFTQHVHGNNFIPNTVLVDCTADSSVASCYHDWLRRGIHVITPNKKANSGPLDQYSKLRALQRQSYTHYFYE ATVGAGLPIISTLRGLLETGDKILRIEGIFSGTLSYIFNNFIGTRAFSDVVAEAKQAGYTEPDPRDDLSGTDVARKVIILARESGLKLELSDIPVQSLVP QPLRASASVEEYMQRLPQFDSEMARERQEAEDAGDVLRYVGVVDAVSEEGRVELRRYKKDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGG IFSDILRLASYLGAPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19710		AK-HSDHII, AK-H...	aspartate kinase-homoserine de...		Potri.019G071700 [exp]	0	1	Pt-HSDH.1
AT2G44520		COX10	cytochrome c oxidase 10 (.1)		Potri.002G216100 [exp]	1.73	0.7547
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Potri.001G166000 [exp]	7.48	0.7095
AT4G01130			GDSL-like Lipase/Acylhydrolase...		Potri.014G094100 [exp]	21.44	0.6463
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Potri.001G396300 [exp]	23.49	0.6996
AT3G10160		ATDFC, FPGS2	folylpolyglutamate synthetase ...		Potri.006G045400 [exp]	31.46	0.6235
AT4G33380			unknown protein		Potri.002G127700 [exp]	31.54	0.6779
AT2G21340			MATE efflux family protein (.1...		Potri.009G122900 [exp]	37.49	0.5903
AT1G54870			NAD(P)-binding Rossmann-fold s...		Potri.019G023900 [exp]	37.70	0.6487
AT5G38970		ATBR6OX, CYP85A...	brassinosteroid-6-oxidase 1 (....		Potri.004G117700 [exp]	42.28	0.6567
AT4G35987			S-adenosyl-L-methionine-depend...		Potri.007G057000 [exp]	47.47	0.6141

Compare expression of checked genes

Potri.019G071700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.