Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22850 331 / 5e-113 SNARE associated Golgi protein family (.1) AT5G19070 79 / 8e-17 SNARE associated Golgi protein family (.1) AT1G03260 79 / 1e-16 SNARE associated Golgi protein family (.1) AT2G02370 45 / 3e-05 SNARE associated Golgi protein family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G099600 [exp] 431 / 3e-152 AT1G22850 305 / 6e-102 SNARE associated Golgi protein family (.1) Potri.008G202600 [exp] 76 / 9e-16 AT5G19070 338 / 1e-117 SNARE associated Golgi protein family (.1) Potri.010G030800 [exp] 76 / 1e-15 AT5G19070 321 / 7e-111 SNARE associated Golgi protein family (.1) Potri.001G078700 [exp] 50 / 8e-07 AT2G02370 390 / 2e-136 SNARE associated Golgi protein family (.1.2) Potri.003G151800 [exp] 49 / 3e-06 AT2G02370 377 / 2e-131 SNARE associated Golgi protein family (.1.2) Potri.003G117400 [exp] 48 / 3e-06 AT1G12450 343 / 1e-118 SNARE associated Golgi protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006162 [exp] 326 / 5e-111 AT1G22850 394 / 2e-137 SNARE associated Golgi protein family (.1) Lus10041062 [exp] 316 / 1e-107 AT1G22850 377 / 2e-131 SNARE associated Golgi protein family (.1) Lus10004421 [exp] 84 / 2e-18 AT5G19070 361 / 2e-126 SNARE associated Golgi protein family (.1) Lus10034028 [exp] 82 / 1e-17 AT5G19070 363 / 3e-127 SNARE associated Golgi protein family (.1) Lus10028016 [exp] 76 / 1e-15 AT1G03260 328 / 2e-113 SNARE associated Golgi protein family (.1) Lus10021942 [exp] 74 / 5e-15 AT5G19070 343 / 9e-120 SNARE associated Golgi protein family (.1) Lus10012371 [exp] 66 / 3e-12 AT1G03260 274 / 1e-92 SNARE associated Golgi protein family (.1) Lus10012163 [exp] 50 / 1e-06 AT2G02370 401 / 4e-141 SNARE associated Golgi protein family (.1.2) Lus10008915 [exp] 45 / 6e-05 AT1G12450 338 / 5e-117 SNARE associated Golgi protein family (.1) Lus10028900 [exp] 42 / 0.0005 AT1G12450 348 / 9e-121 SNARE associated Golgi protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09335 [poplar] [flax] SNARE_assoc SNARE associated Golgi protein
Representative CDS sequence Show only first row Show all	>Potri.019G071900.1 pacid=42773717 polypeptide=Potri.019G071900.1.p locus=Potri.019G071900 ID=Potri.019G071900.1.v4.1 annot-version=v4.1 ATGCGCACCCTCCTCAACTCAAGGCCACTAACACCATTACCACCATGTCTCGCTTCAAATTTCAACTCTTCTCCATTTCGCTCTCTGTTTCACTACAGCC TTAGAACCAACAAGAGATTTCATTTCTTATCTCCTTGTTCTTCCTTAAAACAAAAAAAGAAACAACAGCAGACACTTAGAAAGACCAATGCCCCACAAAG TGTAAGGTGGTTCTTGAACACAAAAGGTGATGATAGTGAAGCTGAAGAGGGGTTGGAAGGAGACACTGCATTTAAAGGTACTCTTTTGGCCGGAGTCTTG TTGGTTGGTGTTGTTGGTGGGTTTGGTGCTGTTGGGTATATCTACAAGGACCAGATCAATGCTTTCTTGAACCAGTTTTCTGGGTTCATTGAAGGTTATG GACCAGCTGGATATGCTTTATTTGTAGCGGTTTATGCAGGATTGGAAATCCTTGCAATTCCAGCGATTCCATTAACCATGTCAGCAGGTCTTCTTTTTGG CTCTCTTATTGGCACCATTATTGTCTCTATAAGTGGAACGGCTGCTGCAAGCATTGCTTTTCTGATAGCTAGATATTTTGCTCGAGAGCGCATTCTTAAA CTGGTTGAAGGAAATAAAAAATTTCTTGCAATTGACAAAGCGATCGGGGAAAATGGCTTCAAAGTTGTCACCCTTCTACGTTTGAGTCCTTTGCTTCCAT TTTCTCTCGGGAATTATTTGTATGGATTGACATCTGTTAAGTTCATCCCCTATGTCTTGGGAAGTTGGTTGGGGATGCTTCCAGGAACATGGGCTTATGT GAGTGCTGGTGCATTTGGCCGTGCAATCATTCAAGAGGAATCTGAGCTCAGATTAAGGGAAGGTAACAGTGGGCTTTGGACCCTTGGACTGGGATTATTG GTCACAGCTATTGCTGCAACTTATGTAACGCGGCTGGCTAAGGATGCTGTAAAGGATATTGAGTAG
AA sequence Show only first row Show all	>Potri.019G071900.1 pacid=42773717 polypeptide=Potri.019G071900.1.p locus=Potri.019G071900 ID=Potri.019G071900.1.v4.1 annot-version=v4.1 MRTLLNSRPLTPLPPCLASNFNSSPFRSLFHYSLRTNKRFHFLSPCSSLKQKKKQQQTLRKTNAPQSVRWFLNTKGDDSEAEEGLEGDTAFKGTLLAGVL LVGVVGGFGAVGYIYKDQINAFLNQFSGFIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGSLIGTIIVSISGTAAASIAFLIARYFARERILK LVEGNKKFLAIDKAIGENGFKVVTLLRLSPLLPFSLGNYLYGLTSVKFIPYVLGSWLGMLPGTWAYVSAGAFGRAIIQEESELRLREGNSGLWTLGLGLL VTAIAATYVTRLAKDAVKDIE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22850			SNARE associated Golgi protein...		Potri.019G071900 [exp]	0	1
AT5G30510		ARRPS1, RPS1	ribosomal protein S1 (.1)		Potri.008G101100 [exp]	2.00	0.9884
AT2G33800		EMB3113	EMBRYO DEFECTIVE 3113, Ribosom...		Potri.004G045700 [exp]	2.00	0.9878
AT5G14910			Heavy metal transport/detoxifi...		Potri.001G350500 [exp]	5.74	0.9825
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Potri.004G014850 [exp]	6.63	0.9821
AT1G32550		FdC1	ferredoxin C 1, 2Fe-2S ferredo...		Potri.003G090400 [exp]	7.07	0.9781
AT4G13220			unknown protein		Potri.002G251800 [exp]	7.07	0.9814
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Potri.002G047100 [exp]	7.41	0.9777
AT4G21445			unknown protein		Potri.011G041800 [exp]	9.94	0.9785
AT5G51110			Transcriptional coactivator/pt...		Potri.015G110500 [exp]	10.67	0.9668
AT1G71500			Rieske (2Fe-2S) domain-contain...		Potri.019G073900 [exp]	11.53	0.9797

Compare expression of checked genes

Potri.019G071900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.