Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SGR2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31480 1169 / 0 SGR2 shoot gravitropism 2 (SGR2) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G099700 [exp] 1624 / 0 AT1G31480 1154 / 0.0 shoot gravitropism 2 (SGR2) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041056 [exp] 1159 / 0 AT1G31480 1115 / 0.0 shoot gravitropism 2 (SGR2) (.1) Lus10003520 [exp] 1097 / 0 AT1G31480 1035 / 0.0 shoot gravitropism 2 (SGR2) (.1) Lus10002946 [exp] 214 / 3e-62 AT1G31480 200 / 7e-58 shoot gravitropism 2 (SGR2) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02862 [poplar] [flax] DDHD DDHD domain
Representative CDS sequence Show only first row Show all	>Potri.019G072300.7 pacid=42774095 polypeptide=Potri.019G072300.7.p locus=Potri.019G072300 ID=Potri.019G072300.7.v4.1 annot-version=v4.1 ATGGCGGATTCCAAGGAAAACCCGGCGATTTCAGAGCAAGTACTGCCTGATTTGCTAAAGAATACGCCTTCGAATATTGCAAGATTGGAGGATGTGATTG AGCATTGTAAAGGTCGTCAAAAGTATCTTGCTCAGACTGGAAGTCCATCTGATGGTGGTGATGTTAGGTGGTATTTCTGTAAGGTGCCTTTGGTAGAGAA TGAGTTAGCTGCCTCAGTCCCACGCACTGAGATTGTGGGAAAGAGCGACTATTTTCGTTTTGGCATGAGGGATTCTCTTGCAATAGAGGCATCTTTCTTG CAGAGAGAAGAAGAATTGCTCTCTAGTTGGTGGAAAGAGTATGCAGAATGTAGTGAAGGCCCAAGTGGCTGGCCTACTACTAGTAAGAAGATTGATACCC AAGAAAATGCTGATTCTCCAGTGGGTGGACGAGCAGCTCAACTGCATGAAGTGGAAGAGGAGAGAGTTGGCGTGCCTGTAAAGGGAGGACTTTATGAGGT AGATCTGGTGAAGAGACATTGTTTTCCTGTTTACTGGAATGGAGAAAATCGGCGTGTTTTGAGAGGTCATTGGTTTGCTCGTAAAGGAGGCTTGGGTTGG CTCCCTCTTCGAGAGGACGTAGCTGAGCAGTTGGAGATTGCATACCAGAGCCAGGTTTGGCATCGAAGGACCTTTCAACCATCTGGCCTTTTTGCAGCTC GTGTTGATCTGCAAGGCTCTACCCCTGGACTTCATGCACTTTTTACCGGAGAAGACAATACCTGGGAGGCTTGGCTCAACATTGATGCTTCTGGCTTTTC TAGTATCATTACCTTGAGTTGGAATGGAATCAAGTTAAGGCGTGGCTACTCTGCATCTCTCTCAGAAAAACCAACCCAGGATGAACTACGACAAAAGAAG GAGGAGGAAATGGATGATTACTGTTCCAAGGTTCCTGTTCAGCATGTGGTTTTTATGGTTCATGGTATTGGCCAAAGGTTGGAGAAGTCTAATTTGGTTG ATGATGTTAGCAGTTTCCGCCATATCACTACGAGTCTCTCTGAACAACATCTTACTTCATACCAACAAGGTGTTCAACGAGTTCTTTTTATCCCATGCCA GTGGAGAAAGGGTTTGAAGCTGAGTGGTGAAGCTGCGGTTGAAAAGATTACTTTAGATGGTGTACGTGGTTTGCGTGTTATGCTGAGTGCAACAGTTCAT GATGTATTGTACTACATGAGCCCCATCTATCGTCAAGACATTATTAATGCGGTATCAAACCAATTAAACCGCTTGTATTTGAAGTTCCTTAAGAGGAATC CTGGTTATGATGGAAAGGTTTCATTATATGGTCATTCATTGGGAAGTGTCCTCTCATATGACATCCTCTGCCATCAAGAGAATCTGACTTCTCCATTCCC AATGGATTGGATGTATAAAGAATACTCTAGGAGTGAAGAATCTTCCCTTGATACGAAGCGTGGCACGTCAACCAACCTGGAGGATAACATCTCCAATGCA GTCAAAGAAGCCAAGAAAATAGTGGATCCTGTTGAGGAAAAAATGATGAGTGCACGATCAACTTTAGTACATGAGAATGGACTTTCTGATGAATTTTCCA CAATCTTGAGTCCCATTGCATCAGAGTTGGTTGGAGCTGCATCAGATTCAAATTTTAAGCAAATACGTGGAAAAGAAAGTCCCCATGAATTTGTTTGTGA CTCCAGTGATGTGCTTTCTCAGGAAAGAGATCACTTATGTGAAGCTAAAGAGATGAAGTTAGATGACCCAATGAGTGGTGTGGAAAACAGGGCAGTGGAA GGCAGTGAAAATGCCGGCAACAAGGAAAAAGAAATTAATATGCTCATGAAAGAGATTGATTCCCTAAAAGCTAAAATAGCAGAGTTGGAATTCAAGTGTG GTGGTGGAGATGCAAGTGAAAATGGAAAGGCAACTGAAAGCATGACAAAGCAACCCATATCCAAGAAATTGGCAGTTGGACTAGATGAAGCATCAAAGAG TTATACCCCTTATATCAAGTATACAAAACTTGAATTCAAGGTTGACACATTCTATGCTGTTGGATCACCTCTTGGAGTCTTTCTTTCTCTTCATAATGTT CGGATTGGACTCGGGAAAGGGAAAGAATATTGGGCAGAGGAAAATATCAGTGAAGAAATGCCAGCATGTCGTCAAATGCTCAACATTTTTCACCCATTTG ATCCTGTAGCATATAGAATAGAACCTCTTGTCTGTAAAGAATTTATCAGCAAGCGCCCAGTTATTATTCCTTACCACAAAGGTGGAAGAAGGTTGCATAT TGGGTTTCAGGAGTTCACTGAAGATTTGGCTGCTCGTTCTCAAGCAATAATAAATCATCTAAACGTTGTGAAGGTCAAGGTGCTTACAGTTTGCCAATCA AAAATTGCCGATAGCGAAGAAGAAGCAGAAAATGTCAATGAAAAAGAAGAGAGGACATATGGCTCAATAATGATGGAGAGGTTAACTGGAAGTGAAGGAA GAATAGACCACATGCTTCAAGATAAAACATTTGAACATCCATATCTGCAAGCCATTGGAGCACACACGAACTATTGGAGGGATCATGACACAGCTCTCTT CATTTTAAAACACTTGTATAGGGAGATACCTGAAGAACCCAACTTACCTGCAGAATCTAGTGGAGGCACCTCAAAAGATGAGATTGGTTCCACAGGATGG TATGATCAAAGTGAAACTAATGAGGAACTCCCTTTGACATTCTCTGACAGAATGATGGCTAAAAACTTCTCAAAGAAAGCCAATAAATATATGAAAAGCC CCAAGTGCTGA
AA sequence Show only first row Show all	>Potri.019G072300.7 pacid=42774095 polypeptide=Potri.019G072300.7.p locus=Potri.019G072300 ID=Potri.019G072300.7.v4.1 annot-version=v4.1 MADSKENPAISEQVLPDLLKNTPSNIARLEDVIEHCKGRQKYLAQTGSPSDGGDVRWYFCKVPLVENELAASVPRTEIVGKSDYFRFGMRDSLAIEASFL QREEELLSSWWKEYAECSEGPSGWPTTSKKIDTQENADSPVGGRAAQLHEVEEERVGVPVKGGLYEVDLVKRHCFPVYWNGENRRVLRGHWFARKGGLGW LPLREDVAEQLEIAYQSQVWHRRTFQPSGLFAARVDLQGSTPGLHALFTGEDNTWEAWLNIDASGFSSIITLSWNGIKLRRGYSASLSEKPTQDELRQKK EEEMDDYCSKVPVQHVVFMVHGIGQRLEKSNLVDDVSSFRHITTSLSEQHLTSYQQGVQRVLFIPCQWRKGLKLSGEAAVEKITLDGVRGLRVMLSATVH DVLYYMSPIYRQDIINAVSNQLNRLYLKFLKRNPGYDGKVSLYGHSLGSVLSYDILCHQENLTSPFPMDWMYKEYSRSEESSLDTKRGTSTNLEDNISNA VKEAKKIVDPVEEKMMSARSTLVHENGLSDEFSTILSPIASELVGAASDSNFKQIRGKESPHEFVCDSSDVLSQERDHLCEAKEMKLDDPMSGVENRAVE GSENAGNKEKEINMLMKEIDSLKAKIAELEFKCGGGDASENGKATESMTKQPISKKLAVGLDEASKSYTPYIKYTKLEFKVDTFYAVGSPLGVFLSLHNV RIGLGKGKEYWAEENISEEMPACRQMLNIFHPFDPVAYRIEPLVCKEFISKRPVIIPYHKGGRRLHIGFQEFTEDLAARSQAIINHLNVVKVKVLTVCQS KIADSEEEAENVNEKEERTYGSIMMERLTGSEGRIDHMLQDKTFEHPYLQAIGAHTNYWRDHDTALFILKHLYREIPEEPNLPAESSGGTSKDEIGSTGW YDQSETNEELPLTFSDRMMAKNFSKKANKYMKSPKC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Potri.019G072300 [exp]	0	1	Pt-SGR2.2
AT5G65490			unknown protein		Potri.006G134400 [exp]	2.64	0.9417
AT1G54050			HSP20-like chaperones superfam...		Potri.003G071100 [exp]	8.36	0.9249
AT1G33420			RING/FYVE/PHD zinc finger supe...		Potri.013G092000 [exp]	9.74	0.9022
AT1G35660			unknown protein		Potri.019G083100 [exp]	12.40	0.8993
AT3G06250	FAR1_related	FRS7	FAR1-related sequence 7 (.1)		Potri.010G029000 [exp]	12.64	0.8732
AT2G29500			HSP20-like chaperones superfam...		Potri.009G049900 [exp]	12.72	0.9218
AT1G15890			Disease resistance protein (CC...		Potri.011G124432 [exp]	16.24	0.8056
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Potri.016G012900 [exp]	16.52	0.8339
AT5G59720		HSP18.2 HSP18.1...	heat shock protein 18.2 (.1)		Potri.008G062350 [exp]	16.73	0.9198
AT5G56290		EMB2790, PEX5, ...	EMBRYO DEFECTIVE 2790, ARABIDO...		Potri.001G473100 [exp]	17.43	0.8767	PEX5.2

Compare expression of checked genes

Potri.019G072300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.