Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10070 370 / 4e-117 KH domain-containing protein (.1) AT1G33680 341 / 7e-106 KH domain-containing protein (.1) AT2G25970 172 / 4e-45 KH domain-containing protein (.1) AT5G50940 69 / 1e-12 RNA-binding KH domain-containing protein (.1) AT1G51580 62 / 1e-09 RNA-binding KH domain-containing protein (.1) AT5G04430 61 / 1e-09 BTR1S, BTR1L, BTR1 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) AT5G15270 50 / 6e-06 RNA-binding KH domain-containing protein (.1.2) AT5G64390 50 / 6e-06 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) AT1G14170 45 / 0.0002 RNA-binding KH domain-containing protein (.1.2.3) AT2G03110 41 / 0.0007 RNA binding;nucleic acid binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G099800 [exp] 955 / 0 AT4G10070 303 / 5e-92 KH domain-containing protein (.1) Potri.018G055300 [exp] 214 / 2e-59 AT2G25970 319 / 9e-100 KH domain-containing protein (.1) Potri.006G231800 [exp] 206 / 1e-56 AT2G25970 393 / 5e-128 KH domain-containing protein (.1) Potri.005G240601 [exp] 76 / 3e-16 ND / Potri.013G043000 [exp] 66 / 5e-11 AT3G04610 520 / 1e-180 flowering locus KH domain, RNA-binding KH domain-containing protein (.1) Potri.005G056100 [exp] 66 / 7e-11 AT3G04610 566 / 0.0 flowering locus KH domain, RNA-binding KH domain-containing protein (.1) Potri.010G230500 [exp] 60 / 2e-09 AT5G04430 405 / 9e-143 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) Potri.017G042500 [exp] 59 / 1e-08 AT5G64390 345 / 1e-106 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Potri.010G251700 [exp] 59 / 1e-08 AT1G51580 434 / 9e-145 RNA-binding KH domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002947 [exp] 496 / 5e-165 AT4G10070 426 / 1e-138 KH domain-containing protein (.1) Lus10003519 [exp] 471 / 3e-155 AT4G10070 399 / 4e-128 KH domain-containing protein (.1) Lus10004445 [exp] 181 / 7e-51 AT2G25970 309 / 3e-100 KH domain-containing protein (.1) Lus10020998 [exp] 178 / 6e-48 AT2G25970 253 / 2e-76 KH domain-containing protein (.1) Lus10023854 [exp] 177 / 1e-47 AT2G25970 245 / 1e-73 KH domain-containing protein (.1) Lus10013531 [exp] 139 / 2e-34 AT2G25970 325 / 4e-103 KH domain-containing protein (.1) Lus10033557 [exp] 74 / 2e-13 AT5G15270 201 / 3e-59 RNA-binding KH domain-containing protein (.1.2) Lus10037932 [exp] 60 / 2e-09 AT5G04430 449 / 4e-160 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) Lus10017596 [exp] 60 / 4e-09 AT5G15270 169 / 2e-47 RNA-binding KH domain-containing protein (.1.2) Lus10038665 [exp] 59 / 6e-09 AT5G04430 447 / 2e-159 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [poplar] [flax] KH PF00013 [poplar] [flax] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Potri.019G072500.1 pacid=42773719 polypeptide=Potri.019G072500.1.p locus=Potri.019G072500 ID=Potri.019G072500.1.v4.1 annot-version=v4.1 ATGGCGGCAGAGGAGGTTGTGGCACCTGCTGTGATTCCAGTGGCGTCGGATCACAAGAGAAAGCTGGGAGATTTAGAGCCGGAAGTTCTTGAACAAGCTG AGCCAAGTCCGGTCGACGAACAGGAGCCTGAAGTGACTGAGAAAGCTGATGACGTGGAGGATGGTGGTTCGCCTGAGACTAAACGGCTAAGGATTGATGA AAGCAAAACCGATGGGTTAGCCAGCGAAAATGGTTTCAAAGGAGACAAGTCAGATGAACGTGCAAGGGAAGAAACTGAAGAGCAGAGTGTTGAGAATGAG CAAGAGAAGGATGATAATGTTGAGCCTCCATCTGAGGAGGTACTGGAAACAACTGATAAAGAAGAAACAAATGCAGTTATTCCGGAGACTGATAATACCG ACCAAGCTACTGTTGATGGTTCCAAGGATGAGGATGCTGAGAAACCGTCTTTAGAGGATGCTGAGCAACCGTCTTTAGAGGATGCTGAGAAACTGTCTTT AGAGGATGCTGAGGAACATCTATCTGAGGATCAAACAACATCGCGCAAAATTGAGGTTCCGAATGACAAGGTTGGGGTTCTAATTGGTAAGGGTGGAGAT ACTATACGTTACCTGCAATATAATTCTGGAGCAAAAATTCAAATCACAAGGGATTCTGAAGCTGATTCACAATCCACAACAAGGCCAGTGGAATTAATAG GGACTTTAAGCAGTATAAGAAATGCTGAGAAGCTCATCAATGCAGTCATTGCAGAGGCTGATGCTGGGGGTTCCCCATCTCTTGTAGCTATGGGCCTTGC TAGTGGTGCACAAACTGCTGGAGTGGGAGATCAGCTGGAGATTCCAGTTCCCAATGAGAAGGTTGGTCTAATTATAGGACGGGGTGGGGAAACCATCAAA GGTCTTCAAGCCAAATCTGGGGCTCGCATTCAGGTATTGATACCTCAACACCTTCCAGAAGGGGATGGATCTAAAGAAAGAACAGTACGTGTAACTGGAG ATAAGAGGCAAGTTGAGATGGCCAGAGAAATGATAATGGATGTCATGAATCAGACTGTGAGGCCATCAACTCTCTCTAGCAGCTTTAACCAGCAGCAGTC CTATCGACCCCGTGGACCCACAGGCCCAGCTCACTGGGGTCCTCGTGGTCCTCATTCAAACCAGAAAATGCCATATGATTATCAGCATCGGGGTCCATAT CCATCCCATGGTTCGCAGTATCCTCCAGCTTATGGTGATTATCCTCAACATATGGCCCCAAGAAGTAACTACAGTTCTGGTTGGGAGCAAAGACCTGCTA ATGTGCAGGGCCCTCACACACATACCAGTGGCTATGATTACTATAGTCAAGGAGGTCATGCATCTGATCATCCAGTTTCTGGCCCAATGCCTACTCCCAT TCCTGGGCCTGCTTCTCGTCATTCCCCTGCCCCTGTTATGGGTGGACCTCCATCCCAGGTAAATTACAGCTATGGACAGTCCCATGGTCCAGATTATGGG CACCAAGCTCCCTATTCCCAGGCAGCCCCTTCTCACCAGAGCTACGGGCATGGATATGATGAACCGAAGTATCCTTATGGGTATGGAAGTTCACAGCCAG CTTATTCGCAGGCTGGCAACCAACCAGGCTATGGTGCTCAGCAGCAATATGGCAAGCAGCCATCATTTGGAATGCCATCACAGGGACCACCTCCCCAGTC ATATGGTCCTCCTAGGCCTGGTCAACCAGGAGATATGTCTTATCAAGGTCCTATGCAATCAAGTCAACTGTATGGTCCAAATGCACCACCACCACTGCAA CAGCAGTATCCATATGCATCGAGTGGGCCCATGCAGCAACCCTATCCTTCTTATGGGTCCGGATCAGGTTCCGATGGGTATAATCAGGCACAAACTGCAT CTGGCCCAGGCTATCCTCAGCAAGGTGGCCAGCCTGTTCCTACACCTGGACAGCCTGGTGGACAAGCAGCAGCTGGCTATGCGCAAGGTCCTGCTGGGGG CTATGGGTCATATCCATCTGCACAACAAGGTTATCCTGAGCAGCAAGCTGCAAACAATGCAGGTTATGGCTATCAAGGGTCTCAAGATCCTGCTTATGGT AGTGCCCCTGCATATGGTGCACCAGCCAGCCAGCAGGGTTATGCTCAACCAGCACCAACTCAACCAAGCTATGATCAGTCAGTCCCACAATCTGCTGGTT ATGGAGCTGCTCCGGCAACTGCTCCAGTTGGTTATGGGAAAACTGTGTCTCCACAGCCTGGCTATCCTCAATATGACTCAACCCAGATGTATGCTGCGCC ACGCTGA
AA sequence Show only first row Show all	>Potri.019G072500.1 pacid=42773719 polypeptide=Potri.019G072500.1.p locus=Potri.019G072500 ID=Potri.019G072500.1.v4.1 annot-version=v4.1 MAAEEVVAPAVIPVASDHKRKLGDLEPEVLEQAEPSPVDEQEPEVTEKADDVEDGGSPETKRLRIDESKTDGLASENGFKGDKSDERAREETEEQSVENE QEKDDNVEPPSEEVLETTDKEETNAVIPETDNTDQATVDGSKDEDAEKPSLEDAEQPSLEDAEKLSLEDAEEHLSEDQTTSRKIEVPNDKVGVLIGKGGD TIRYLQYNSGAKIQITRDSEADSQSTTRPVELIGTLSSIRNAEKLINAVIAEADAGGSPSLVAMGLASGAQTAGVGDQLEIPVPNEKVGLIIGRGGETIK GLQAKSGARIQVLIPQHLPEGDGSKERTVRVTGDKRQVEMAREMIMDVMNQTVRPSTLSSSFNQQQSYRPRGPTGPAHWGPRGPHSNQKMPYDYQHRGPY PSHGSQYPPAYGDYPQHMAPRSNYSSGWEQRPANVQGPHTHTSGYDYYSQGGHASDHPVSGPMPTPIPGPASRHSPAPVMGGPPSQVNYSYGQSHGPDYG HQAPYSQAAPSHQSYGHGYDEPKYPYGYGSSQPAYSQAGNQPGYGAQQQYGKQPSFGMPSQGPPPQSYGPPRPGQPGDMSYQGPMQSSQLYGPNAPPPLQ QQYPYASSGPMQQPYPSYGSGSGSDGYNQAQTASGPGYPQQGGQPVPTPGQPGGQAAAGYAQGPAGGYGSYPSAQQGYPEQQAANNAGYGYQGSQDPAYG SAPAYGAPASQQGYAQPAPTQPSYDQSVPQSAGYGAAPATAPVGYGKTVSPQPGYPQYDSTQMYAAPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10070			KH domain-containing protein (...		Potri.019G072500 [exp]	0	1
AT4G38890			FMN-linked oxidoreductases sup...		Potri.009G125500 [exp]	1.00	0.8997
AT1G09230			RNA-binding (RRM/RBD/RNP motif...		Potri.013G054300 [exp]	2.44	0.8673
AT1G10510		EMB2004	embryo defective 2004, RNI-lik...		Potri.008G193700 [exp]	8.66	0.8387
AT4G30890		UBP24	ubiquitin-specific protease 24...		Potri.003G202800 [exp]	14.73	0.8292
AT1G02060			Tetratricopeptide repeat (TPR)...		Potri.014G056400 [exp]	16.94	0.8233
AT5G54180		PTAC15	plastid transcriptionally acti...		Potri.015G005200 [exp]	16.97	0.8443
AT5G19020		MEF18	mitochondrial editing factor ...		Potri.010G029900 [exp]	17.32	0.8603
AT3G17970		ATTOC64-III	translocon at the outer membra...		Potri.015G038600 [exp]	18.54	0.8227	AMI3,TOC64.2
AT4G09730		RH39	RH39 (.1)		Potri.005G198300 [exp]	20.09	0.8517
AT1G29900		VEN3, CARB	VENOSA 3, carbamoyl phosphate ...		Potri.010G023100 [exp]	20.49	0.8492	Pt-CARB.1

Compare expression of checked genes

Potri.019G072500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.