Plant FIBer expression Database

Pt-PFI.1,TFCFE (Potri.019G072700) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-PFI.1,TFCFE
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G71440 646 / 0 TFCE, PFI TUBULIN-FOLDING COFACTOR E, tubulin folding cofactor E / Pfifferling (PFI) (.1)
AT3G10220 50 / 9e-07 EMB2804 EMBRYO DEFECTIVE 2804, tubulin folding cofactor B (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G041400
[exp]
52 / 3e-07 AT3G10220 388 / 3e-138 EMBRYO DEFECTIVE 2804, tubulin folding cofactor B (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003518
[exp]
715 / 0 AT1G71440 637 / 0.0 TUBULIN-FOLDING COFACTOR E, tubulin folding cofactor E / Pfifferling (PFI) (.1)
Lus10002949
[exp]
565 / 0 AT1G71440 503 / 2e-176 TUBULIN-FOLDING COFACTOR E, tubulin folding cofactor E / Pfifferling (PFI) (.1)
Lus10002948
[exp]
171 / 1e-50 AT1G71440 161 / 7e-48 TUBULIN-FOLDING COFACTOR E, tubulin folding cofactor E / Pfifferling (PFI) (.1)
Lus10042405
[exp]
51 / 7e-07 AT3G10220 376 / 2e-133 EMBRYO DEFECTIVE 2804, tubulin folding cofactor B (.1)
Lus10026266
[exp]
50 / 2e-06 AT3G10220 378 / 2e-134 EMBRYO DEFECTIVE 2804, tubulin folding cofactor B (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0010 SH3 PF01302 CAP_GLY CAP-Gly domain
Representative CDS sequence
>Potri.019G072700.3 pacid=42773397 polypeptide=Potri.019G072700.3.p locus=Potri.019G072700 ID=Potri.019G072700.3.v4.1 annot-version=v4.1
ATGCAAAGCTCCTCTGATTCGAGCACCTTCAAACTTGACCAGCGAGTCCATTCAACCAATGATCCACGCCGAATCGGTACCGTCAAGTACATAGGACCCG
TGGAAGGCCATCCTGGCACATGGGTCGGTGTCGATTGGGACAATGGAGAAGCCAAACACGACGGGTCATTGAATGGAGTCCGTTACTTCGAAGCAAGGTC
TCAACTTTCTGGGTCATTCGTTCGAGCCCAGAATTTGACTGCGGGCATTTCGTTTATAGAAGCTCTCTATATCAGATACAGAGACCAACCAACTCAAGAA
GATGAGGATGAAATGTATGTGCTTTCAGCTAGTAACAAAAGGGTATCTGTACAACTTGTTGGTAAAGAGAAGATTCAAGATAAGCTAAGTAGATTAGAAG
AATTGACTGGTGCTTCCCTTTCTTATTTGGGTGTTAGCAATCCGGGATCCCCTAATGAAATCAGAAATATAGTGCCAAATCTAAAGCAACTGGACTTGAC
TGGAAATTTACTTTCAGAATGGAAGGATGTTGGCATCATATGTGAACAATTACCTTCTCTTGCAGCACTCAATTTGTCTAACAACTCAATGTCCCATGAG
ATTGTTGGTCTACCACTACTAAAAAGCATCCACATTTTAGTTTTAAACAATACTGGCATAAATTGGACACAGATTGAAGTGCTTAAAGATTTATTGCCAG
TAATTGAGGAGCTACATCTGATGGGAAATGGCATAAATGCAATAAAGACAGCATCTTCATCCATTGTTCATGGATTTGATTCTTTGCGGCTACTGAATTT
GGAAGAGAATTGTATAGCTGAATGGAATGAAATTGTAAAGCTTTCTCAATTAAGAAGTTTGGAGGAACTTCATTTAAACAAGAACAATTTGAACCATATC
TTTTATCCTGATCATGATACAATAGACAAATTGGTTGGTGGTGATGAATCTCATGATCAAAGCTGTATTCCTTTTCAAAATTTACGTTGCCTTCTTCTGG
GAGGTAACAACATTGATGATCTGGCTTCTGTAGACTCATTGAACTCATTTCCTAAATTGATTGACATCAGGCTTTCTGAAAACCCAATTGCTGATCCTGG
AAGAGGAGGTATCCCAAGATTTGTTTTGGTTGCACGATTAGCAAAAGTTGAAATCTTGAATGGAAGTGAGGTAAGCACTCGTGAAAGAAAGGAGTCTGAG
ATCCGGTATGTCCGCTTAGTTATGTCAAAGTTGCATGGAAATCCAGATGAAATCAAACAGCATCCCAGGTTTGTTGAGCTGAAGAATTTTCATGGCATTG
AAGATGAAAGGTCATCGGTTGGAACAACAGGCCCTCAGAAGATGGCTTCTGGACTCCTGTCTGTCACCCTTAAATCTGTGGCTCCATCTATTGGTGAGAA
ACCTCCACTAACAAAGAAACTGCCAGCTGCTACTACGATTGGGAAGCTAAAGATTCTTTGTGAAACGTTTTTCAAGCTTGGGTCCATTAGGCCAAAATTG
TTTCTTCAAGAAGAGGGTTCCCCTCTGCCGATATTGCTTGATGATGAGATGGCAACTTTGATGGATGTTGGAATTGGCAACGAATCAACTGTTCTTGTAG
ACGAAGAGAGTTAG
AA sequence
>Potri.019G072700.3 pacid=42773397 polypeptide=Potri.019G072700.3.p locus=Potri.019G072700 ID=Potri.019G072700.3.v4.1 annot-version=v4.1
MQSSSDSSTFKLDQRVHSTNDPRRIGTVKYIGPVEGHPGTWVGVDWDNGEAKHDGSLNGVRYFEARSQLSGSFVRAQNLTAGISFIEALYIRYRDQPTQE
DEDEMYVLSASNKRVSVQLVGKEKIQDKLSRLEELTGASLSYLGVSNPGSPNEIRNIVPNLKQLDLTGNLLSEWKDVGIICEQLPSLAALNLSNNSMSHE
IVGLPLLKSIHILVLNNTGINWTQIEVLKDLLPVIEELHLMGNGINAIKTASSSIVHGFDSLRLLNLEENCIAEWNEIVKLSQLRSLEELHLNKNNLNHI
FYPDHDTIDKLVGGDESHDQSCIPFQNLRCLLLGGNNIDDLASVDSLNSFPKLIDIRLSENPIADPGRGGIPRFVLVARLAKVEILNGSEVSTRERKESE
IRYVRLVMSKLHGNPDEIKQHPRFVELKNFHGIEDERSSVGTTGPQKMASGLLSVTLKSVAPSIGEKPPLTKKLPAATTIGKLKILCETFFKLGSIRPKL
FLQEEGSPLPILLDDEMATLMDVGIGNESTVLVDEES

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G71440 TFCE, PFI TUBULIN-FOLDING COFACTOR E, tu... Potri.019G072700
[exp]
0 1 Pt-PFI.1,TFCFE
AT3G24495 ATMSH7, MSH7, M... MUTS HOMOLOG 6-2, ARABIDOPSIS ... Potri.006G159200
[exp]
3.87 0.8812
AT3G24495 ATMSH7, MSH7, M... MUTS HOMOLOG 6-2, ARABIDOPSIS ... Potri.006G156314
[exp]
8.48 0.8597
AT2G26590 RPN13 regulatory particle non-ATPase... Potri.006G078800
[exp]
10.39 0.7815
AT1G01225 NC domain-containing protein-r... Potri.002G174700
[exp]
11.22 0.8024
AT5G23200 unknown protein Potri.005G092000
[exp]
13.41 0.8192
AT1G11800 endonuclease/exonuclease/phosp... Potri.004G010400
[exp]
14.49 0.8083
AT3G03890 FMN binding (.1.2) Potri.013G057700
[exp]
15.74 0.7840
AT2G39090 APC7, AtAPC7 anaphase-promoting complex 7, ... Potri.008G215100
[exp]
16.88 0.8068
AT1G10180 unknown protein Potri.015G119300
[exp]
17.23 0.8297
AT3G20260 Protein of unknown function (D... Potri.008G004400
[exp]
18.00 0.8097

Potri.019G072700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.