Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49900 1219 / 0 Beta-glucosidase, GBA2 type family protein (.1) AT1G33700 1165 / 0 Beta-glucosidase, GBA2 type family protein (.1.2) AT4G10060 1118 / 0 Beta-glucosidase, GBA2 type family protein (.1) AT3G24180 857 / 0 Beta-glucosidase, GBA2 type family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G003400 [exp] 1250 / 0 AT5G49900 1298 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Potri.004G227200 [exp] 1234 / 0 AT5G49900 1284 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Potri.003G178000 [exp] 849 / 0 AT3G24180 1485 / 0.0 Beta-glucosidase, GBA2 type family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002950 [exp] 1321 / 0 AT5G49900 1216 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Lus10003517 [exp] 1298 / 0 AT5G49900 1191 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Lus10023340 [exp] 1105 / 0 AT5G49900 1217 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Lus10038471 [exp] 1087 / 0 AT5G49900 1201 / 0.0 Beta-glucosidase, GBA2 type family protein (.1) Lus10000757 [exp] 833 / 0 AT3G24180 1485 / 0.0 Beta-glucosidase, GBA2 type family protein (.1.2) Lus10038469 [exp] 0 / 1 AT5G49900 223 / 1e-69 Beta-glucosidase, GBA2 type family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF04685 [poplar] [flax] DUF608 Glycosyl-hydrolase family 116, catalytic region CL0103 [poplar] [flax] Gal_mutarotase PF12215 [poplar] [flax] Glyco_hydr_116N beta-glucosidase 2, glycosyl-hydrolase family 116 N-term
Representative CDS sequence Show only first row Show all	>Potri.019G072800.1 pacid=42773062 polypeptide=Potri.019G072800.1.p locus=Potri.019G072800 ID=Potri.019G072800.1.v4.1 annot-version=v4.1 ATGGAGAATGGTCTCGCAGCAGCTGAAGGTGAAGAGAAGCTTTTTCCCGATACCCATGCACAGAAGGTCGATCCGGGAAAACCTGCTTCACTGACATGGA AAAGGCAATTGAATAGCAATGGAAAAATCCCTGTGCAGTTCGGTCTAAGTTTCCGAGAAATATCACATATGTTACCGATGGGCCTGAGACTGTGGCGTCA CATCAAGCAAGAAGCAGCAAAAGAAAGAGCAACAATATTTGATTTTTCCAAGAAGCACATTCTTACAAGTGATCATGGGATCCCTTTAGGTGGTATCGGT GCAGGAAGCATTGGAAGAAGCTATAGAGGCGAGTTTCAACACTTTAGACTGTTCCCTGGAATATGTGAAGAAGGCCCAGTTTTGGCAAATCAATTTTCCG CTTTTGTTTCCCGTCCGAGTGGTGAAACGTTTTCCTCTGTATTATGCTCTAGGACTCCAGACATACCCAAAGAAAGCACAGGTTCAGGCATTGAATCTTG GGATTGGAATCTGAATGGCCAGAAGTGTACATATCATGCTCTTTTTCCCAGGGCTTGGACAATCTATGACGGTGCACCTGACCCAGAACTTACAATTGTT TCTCGACAAATTTCACCTTTCATTCCCCACAACTATAAGGAGAGCAGTTTCCCTGTATCAGTTTTTACTTTCACGCTATCTAATCACGGAAAAACTTCAG CTGATGTCACCTTAATGTTTACATGGGCAAATTCTGTGGGTGGGGTCTCTGGACTTTCTGGTCATCATTTCAACTCAAAGATGATGACAAAAGATGGAGT TCATGCAGTCACGTTACACCACAAAATGACAAATAGACAGCCTCCGGTAACCTTTGCCATTGCAGCACAGGAGACGGCGGACGTTCATGTTTCTGAATGT CCTTGTTTCCTGATATCTGGAGATTCCCAGGATGTCAGTGTCACAGCAAAAGATATGTGGGATGGAATTAAAAAGAACGGGACATTTGATCAGATTGGTT GTAATAAAACTTCACCTTCAGAACCAGGATCATCTATTGGAGCAGCCATAGCAGCCTCTGTGACCGTTCCTTCTGGCTCTATCCGCACCGTCACATTTTC GTTATCATGGGACATCCCAGAAATAAGATTTAGTGAAAGAAGTTACCACAGGCGTTATACAAAATTCTATGGCACACTAGGAGATGCAGCTGCCAACATT GCACGTGATGCTATTCTTGAGCATGCTAACTGGGAATCCCAGATAGAAGCATGGCAAAGACCTATTCTTGAAGACAAAAGGGTTCCTGAATGGTACCCTA TCACTCTCTTCAATGAGCTCTATTATCTCAATGCTGGAGGGACAATTTGGACAGATGAATCACCTCCAATGCAAAATTTAACAGCTGTTAGAGAAAGAAG ATTTTCTCTCGAAAGGTCAAGTTCAGGTTACAAGAATGTAAACGGTATTGCTCATAAGAATGACACGGCTATTGAAATCCTGGAAAGGATGGCATCCACG TATGAACAACTACATAATCCGGTATCATCAAATTCCGTTTTTGGAGCAAATTTGCTTCAGAATGGAGAAGAAAATATCGGCCAGCTCCTTTATCTTGAAG GAACTGAATACCTAATGTGGAATACCTATGATGTTCATTTCTATGCATCTTTTGCACTTGTAATGCTATTTCCAAAACTTGAACTCAATCTCCAAAGAGA CTTCGCAGCTGCAGTACTGATGCATGATCCTAGTAGGATGCAAATTATGAGTGATGGGAAGTGGGTTCCACGAAAGGTTCTTGGTGCTGTTCCTCATGAT GTTGGGCTTAATGACCCCTGGTTTGAAATAAACGCCTATAACCTTTTCAGTACAGCTAGGTGGAAGGACTTGAACTGTAAATTTGTTCTCCAGGTGTACA GGGATGTGGTTGCTACTGGTGATAAAGATTTTGCTCGAGCTGTTTGGCCTTCAGTATATGTTGCGATGGCTTATATGGATCAATTTGACAAGGATGGAGA TGGAATGATTGAAAATGAGGGGATACCTGATCAAACCTATGATACATGGTCTGTTACTGGTGTAAGTGCATACTGTGGTGGCCTTTGGGTGGCAGCACTC CAGGCTACCTCAGCCATGGCACATGAAGTTGGTGATGATGGATCTGCTAATTATTTCTGGATTAAGTATCAAAAGGCAAAAACTGTTTATGGCAAGTTAT GGAATGGTTCCTACTTCAACTACGACAGCAGTGGTAATAAGTCTATACAAGCTGATCAATTGGCTGGGCAATGGTATGCTAGAGCGTGTGGCCTTTCACC GGTCGTCGATGGGGACAAAGCCAGGAAGGCATTGGAGAAGATTTACGAGTTCAATGTCTTGAAGGTGAAAGGAGGAACGCGTGGGGCTGTGAACGGGATG CTACCAGATGGAAGAGTTGATCTGACGGCAATGCAAACGAAAGAAATATGGCCTGGTGTTACCTACGCTCTTTCTGCTTCTATGATTCAAGAGGGACTGG AGGAAATGGCTTTTCAGACTGCAGTTGGTATCTACAATGCAGCATGGTCCGAAGAAGGTCTTGGTTATTCATTCCAGATTCCAGAAAGTTGGGACATGAA TGATCAATATCGGTCTCTTTGCTACATGCGACCTTTAGCCATATGGGCAATGCAGTGGGCCTTATCAAAACCTAAGGACTTTAAAGAAGAGATGCACCAT GAAGGGATCGAGGACGAGTCCTATCTTAAGCAACATGCAGGATTTTCCAAAGTAGCTCACCTTCTTAGGTTGCCGGAAGAGGAAGCACCAAAAAGCTTCT TTCAGGCTGTTTATGAGTTTACTTGCAAGAGAATGCTATTTTAA
AA sequence Show only first row Show all	>Potri.019G072800.1 pacid=42773062 polypeptide=Potri.019G072800.1.p locus=Potri.019G072800 ID=Potri.019G072800.1.v4.1 annot-version=v4.1 MENGLAAAEGEEKLFPDTHAQKVDPGKPASLTWKRQLNSNGKIPVQFGLSFREISHMLPMGLRLWRHIKQEAAKERATIFDFSKKHILTSDHGIPLGGIG AGSIGRSYRGEFQHFRLFPGICEEGPVLANQFSAFVSRPSGETFSSVLCSRTPDIPKESTGSGIESWDWNLNGQKCTYHALFPRAWTIYDGAPDPELTIV SRQISPFIPHNYKESSFPVSVFTFTLSNHGKTSADVTLMFTWANSVGGVSGLSGHHFNSKMMTKDGVHAVTLHHKMTNRQPPVTFAIAAQETADVHVSEC PCFLISGDSQDVSVTAKDMWDGIKKNGTFDQIGCNKTSPSEPGSSIGAAIAASVTVPSGSIRTVTFSLSWDIPEIRFSERSYHRRYTKFYGTLGDAAANI ARDAILEHANWESQIEAWQRPILEDKRVPEWYPITLFNELYYLNAGGTIWTDESPPMQNLTAVRERRFSLERSSSGYKNVNGIAHKNDTAIEILERMAST YEQLHNPVSSNSVFGANLLQNGEENIGQLLYLEGTEYLMWNTYDVHFYASFALVMLFPKLELNLQRDFAAAVLMHDPSRMQIMSDGKWVPRKVLGAVPHD VGLNDPWFEINAYNLFSTARWKDLNCKFVLQVYRDVVATGDKDFARAVWPSVYVAMAYMDQFDKDGDGMIENEGIPDQTYDTWSVTGVSAYCGGLWVAAL QATSAMAHEVGDDGSANYFWIKYQKAKTVYGKLWNGSYFNYDSSGNKSIQADQLAGQWYARACGLSPVVDGDKARKALEKIYEFNVLKVKGGTRGAVNGM LPDGRVDLTAMQTKEIWPGVTYALSASMIQEGLEEMAFQTAVGIYNAAWSEEGLGYSFQIPESWDMNDQYRSLCYMRPLAIWAMQWALSKPKDFKEEMHH EGIEDESYLKQHAGFSKVAHLLRLPEEEAPKSFFQAVYEFTCKRMLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49900			Beta-glucosidase, GBA2 type fa...		Potri.019G072800 [exp]	0	1
AT3G14830			unknown protein		Potri.001G386700 [exp]	1.41	0.7574
AT5G04480			UDP-Glycosyltransferase superf...		Potri.008G029400 [exp]	3.46	0.6777
AT4G39870			TLD-domain containing nucleola...		Potri.007G092700 [exp]	4.58	0.6637
AT1G75180			Erythronate-4-phosphate dehydr...		Potri.009G115800 [exp]	6.63	0.6525
AT2G39890		ATPROT1, ProT1	proline transporter 1 (.1.2)		Potri.010G194600 [exp]	6.92	0.7395	PtrProT2
AT2G46150			Late embryogenesis abundant (L...		Potri.003G133400 [exp]	13.19	0.6637
AT3G29270			RING/U-box superfamily protein...		Potri.012G067200 [exp]	13.26	0.6422
AT1G09840		AtHIR1, ATSK41	hypersensitive induced reactio...		Potri.004G225700 [exp]	15.87	0.6516	ASK4.1
AT4G27220			NB-ARC domain-containing disea...		Potri.018G137900 [exp]	21.93	0.6138
AT5G20260			Exostosin family protein (.1)		Potri.018G125058 [exp]	22.49	0.6346

Compare expression of checked genes

Potri.019G072800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.