Plant FIBer expression Database

Potri.019G072900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G10050 554 / 0 esterase/lipase/thioesterase family protein (.1)
AT2G26740 43 / 0.0002 ATSEH soluble epoxide hydrolase (.1)
AT1G68890 43 / 0.0003 magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases (.1)
AT5G11650 41 / 0.0008 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G099900
[exp]
636 / 0 AT4G10050 549 / 0.0 esterase/lipase/thioesterase family protein (.1)
Potri.010G135500
[exp]
47 / 1e-05 AT1G68890 1931 / 0.0 magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases (.1)
Potri.016G077066
[exp]
44 / 5e-05 AT3G52570 173 / 1e-53 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006170
[exp]
562 / 0 AT4G10050 530 / 0.0 esterase/lipase/thioesterase family protein (.1)
Lus10041054
[exp]
454 / 4e-160 AT4G10050 429 / 3e-150 esterase/lipase/thioesterase family protein (.1)
Lus10021315
[exp]
51 / 7e-07 AT3G52570 397 / 2e-136 alpha/beta-Hydrolases superfamily protein (.1)
Lus10030915
[exp]
47 / 2e-05 AT1G68890 1693 / 0.0 magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases (.1)
Lus10022689
[exp]
42 / 0.0002 AT3G52570 182 / 5e-57 alpha/beta-Hydrolases superfamily protein (.1)
Lus10016992
[exp]
42 / 0.0004 AT3G52570 433 / 1e-150 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0028 AB_hydrolase PF12697 Abhydrolase_6 Alpha/beta hydrolase family
Representative CDS sequence
>Potri.019G072900.1 pacid=42773627 polypeptide=Potri.019G072900.1.p locus=Potri.019G072900 ID=Potri.019G072900.1.v4.1 annot-version=v4.1
ATGGAATCTTCAAATCTCACTTCACTACCTGAAGAAACCCTAGACGTAGAAGACGAACAGCAGCAGCAAGAAAATCTAAAGAATCCACCAGTCCCTGCCT
TTTCTTCCGTCCCGACTCGCCCTCCTACAAAGAGTTCTTTAAAAAAGTATGTTCCTTTAGAGTGGACAGAATTCTTTGACAAGGAGGAAGATGTCTGCAT
TCCAGACTCCGATGATGTATTTCATGTATATATGGCAGGGACAGAGGGGCCGGTTGTTTTTTGTTTACACGGAGGCGGTTATTCTGGGCTTTCATTTGCA
CTCTCATCAAGTAAAATTAAGGAGAAAGCTCGGGTGGTTGCGATGGACTTGAGAGGACATGGAAAGACGTCGACCGAAAATGAGCTTGATCTATCTGTCG
AGACTTTGTGTAATGATGTTTTCGCTGTATTGAAGGCAATGTATGGAGATTCTCCTCCTGCAATTGTGCTTGTTGGCCACAGCATGGGTGGCTCAGTTGC
TGTGCATGTTGCTGCAAAAAAAGCATTACCTAGCTTGGCTGGACTGGTTGTTGTGGATGTTGTGGAGGGAACAGCTATGGCTTCATTGGCTCACATGCAG
AAACTCTTATCAAGTAGGATGCAGCATTTTTCTAGCATGGAAAAAGCGATAGAATGGAGTGTCAGGGGAGGTTCATTAAGAAACATCGATTCTGCTCGTG
TATCTGTGCCAACCACATTAAAGTACGATGATTCGAAGAAATGTTATGTTTATAGAACCCGTCTGGAGGAAACAGAACAATATTGGAGAGGATGGTATGA
AGGCCTTTCAGATAAATTTCTATCATGTCCCATTCCCAAGCTCTTGCTTTTAGCAGGAACAGACAGACTGGACAGATCTCTTACAATTGGGCAAATGCAA
GGGAAGTTCCAAATGGTTGTTGTCAGACATACTGGGCATGCTATACAGGAAGACGTACCTGATGAATTTGCGACCCTGATAATTAATTTTATATCTCGTA
ACCGTATAGGGCCTCATGGGATTGTGATTCCTGGACTCCGTCGACCAGTACAACCGCAACAATGA
AA sequence
>Potri.019G072900.1 pacid=42773627 polypeptide=Potri.019G072900.1.p locus=Potri.019G072900 ID=Potri.019G072900.1.v4.1 annot-version=v4.1
MESSNLTSLPEETLDVEDEQQQQENLKNPPVPAFSSVPTRPPTKSSLKKYVPLEWTEFFDKEEDVCIPDSDDVFHVYMAGTEGPVVFCLHGGGYSGLSFA
LSSSKIKEKARVVAMDLRGHGKTSTENELDLSVETLCNDVFAVLKAMYGDSPPAIVLVGHSMGGSVAVHVAAKKALPSLAGLVVVDVVEGTAMASLAHMQ
KLLSSRMQHFSSMEKAIEWSVRGGSLRNIDSARVSVPTTLKYDDSKKCYVYRTRLEETEQYWRGWYEGLSDKFLSCPIPKLLLLAGTDRLDRSLTIGQMQ
GKFQMVVVRHTGHAIQEDVPDEFATLIINFISRNRIGPHGIVIPGLRRPVQPQQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G10050 esterase/lipase/thioesterase f... Potri.019G072900
[exp]
0 1
AT5G11960 Protein of unknown function (D... Potri.006G226000
[exp]
1.00 0.7974
AT2G01690 ARM repeat superfamily protein... Potri.008G134600
[exp]
13.96 0.7428
AT2G47360 unknown protein Potri.002G195400
[exp]
14.49 0.7682
AT3G28050 nodulin MtN21 /EamA-like trans... Potri.003G192900
[exp]
17.37 0.7727
AT5G05170 IXR1, CEV1, ATH... ISOXABEN RESISTANT 1, CONSTIT... Potri.006G052600
[exp]
23.45 0.7207 CESA4.1
AT5G03250 Phototropic-responsive NPH3 fa... Potri.016G090400
[exp]
25.80 0.6667
AT3G52990 Pyruvate kinase family protein... Potri.010G233200
[exp]
30.88 0.6772
AT4G02570 AXR6, ATCUL1 AUXIN RESISTANT 6, cullin 1 (.... Potri.008G217300
[exp]
33.94 0.7130 Pt-CUL1.4
AT4G22680 MYB ATMYB85 myb domain protein 85 (.1) Potri.015G129100
[exp]
39.11 0.7252
AT1G65930 cICDH cytosolic NADP+-dependent isoc... Potri.008G080500
[exp]
39.94 0.6912 IDH1.3

Potri.019G072900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.