Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33780 349 / 4e-120 Protein of unknown function (DUF179) (.1) AT3G29240 171 / 2e-50 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2) AT3G19780 71 / 4e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G100000 [exp] 489 / 4e-175 AT1G33780 385 / 3e-134 Protein of unknown function (DUF179) (.1) Potri.004G125800 [exp] 166 / 5e-49 AT3G29240 358 / 3e-124 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009463 [exp] 359 / 1e-123 AT1G33780 379 / 6e-132 Protein of unknown function (DUF179) (.1) Lus10001286 [exp] 352 / 1e-120 AT1G33780 386 / 9e-135 Protein of unknown function (DUF179) (.1) Lus10005224 [exp] 165 / 1e-48 AT3G29240 291 / 2e-98 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2) Lus10030696 [exp] 76 / 5e-17 AT3G29240 139 / 8e-42 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2) Lus10030695 [exp] 65 / 1e-12 AT3G29240 89 / 8e-22 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2) Lus10013425 [exp] 60 / 1e-09 AT3G19780 743 / 0.0 unknown protein Lus10040970 [exp] 59 / 2e-09 AT3G19780 500 / 5e-157 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02622 [poplar] [flax] DUF179 Uncharacterized ACR, COG1678
Representative CDS sequence Show only first row Show all	>Potri.019G073000.1 pacid=42774652 polypeptide=Potri.019G073000.1.p locus=Potri.019G073000 ID=Potri.019G073000.1.v4.1 annot-version=v4.1 ATGATGGATCTGTGGGCAGTTCATGTGAAGAACACAACTGGAAGCCCTCTTTGTTTGAGAAATCATTCAATTCGAGACAAATCATTCAGTTTTGGGAAAT TCAGGGTTTTGGACGTTAGGGTTTTGAAGCGTAATGTTTCTTCTTTTGGGTATCATTCTTTGAGTGTCAAAGCTATGGCTAAGAAGAATGGCAATGATAA CTCCAATTCCTCTTCTCCTTCTCCTTCTGGAAATGGAGATGGTTCAAAAGGAAGTAACTCTCCTGATGGGAACAAAGCCAATGACTTTGCTTCCCAAAAA TCTCATAGGGTAAACTTTGATTGGAGAGAGTTTAGGGCAAATTTATTTGCTCAGGAGAAGGCAGGGAAGGCAGAATCTGATGCTCACAACCAAACTGGGA CACCCCAGGAGTCAAAACCCCTTGGCCTGAAATGGGCCCACCCTATTCCTGTACCTGAGACTGGCTGTGTCCTTGTTGCCACAGAAAAACTTGATGGAGT TCGCACCTTTGAAAGAACTGTCGTTCTTCTCCTCAGATCTGGAACCAGACACCCACAAGAGGGACCATTTGGAGTTGTCATAAACCGCCCACTTAACAAG AAGGTCAGGCACATGAAGCCCACTAATATGGAATTAGCAACCACTTTTGCTGATTTTTCTCTTCATTTTGGGGGACCCCTCGAGGCAAGCATGTTTTTAT TAAAAACAGGGGAGAAGACGAAGCTTGAAGAGTTTGAAGAGGTAATTCCTGGCCTGTGTTTTGGTGCTAGAAACAGTTTGGATGAAGCTGCAGCACTTGT GAAGAAAGGGGTGCTGAAGCCTCAGGATTTCAGATTCTTTGTTGGTTATGCTGGGTGGCAGCTAGATCAGTTGAGGGAGGAGATTGAATCAAATTATTGG TATGTGGCTGCATGTAGTTCTAATCTGATTTGTGGGGGTTCATCAGGCTCATCATCAGAAAGTTTATGGGAGGAGATTTTGCAGCTAATGGGTGGTCATT ACTCGGAACTAAGCCGGAAGCCTAAGCGGGATGTGTAG
AA sequence Show only first row Show all	>Potri.019G073000.1 pacid=42774652 polypeptide=Potri.019G073000.1.p locus=Potri.019G073000 ID=Potri.019G073000.1.v4.1 annot-version=v4.1 MMDLWAVHVKNTTGSPLCLRNHSIRDKSFSFGKFRVLDVRVLKRNVSSFGYHSLSVKAMAKKNGNDNSNSSSPSPSGNGDGSKGSNSPDGNKANDFASQK SHRVNFDWREFRANLFAQEKAGKAESDAHNQTGTPQESKPLGLKWAHPIPVPETGCVLVATEKLDGVRTFERTVVLLLRSGTRHPQEGPFGVVINRPLNK KVRHMKPTNMELATTFADFSLHFGGPLEASMFLLKTGEKTKLEEFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGWQLDQLREEIESNYW YVAACSSNLICGGSSGSSSESLWEEILQLMGGHYSELSRKPKRDV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G33780			Protein of unknown function (D...		Potri.019G073000 [exp]	0	1
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Potri.019G044200 [exp]	4.12	0.9418
AT5G64380			Inositol monophosphatase famil...		Potri.017G042900 [exp]	5.47	0.9370
AT4G17070			peptidyl-prolyl cis-trans isom...		Potri.014G051300 [exp]	8.12	0.9274
AT4G39620		ATPPR5, EMB2453	EMBRYO DEFECTIVE 2453, A. THAL...		Potri.005G082400 [exp]	11.83	0.9307
AT1G11870		AtSRS, OVA7	ovule abortion 7, Seryl-tRNA s...		Potri.002G100300 [exp]	12.80	0.9410
AT3G07500	FAR1_related		Far-red impaired responsive (F...		Potri.007G128700 [exp]	15.49	0.8854
AT5G66470			RNA binding;GTP binding (.1)		Potri.007G021900 [exp]	19.39	0.9272
AT3G24590		PLSP1	plastidic type i signal peptid...		Potri.018G081800 [exp]	19.79	0.9335
AT5G18260			RING/U-box superfamily protein...		Potri.013G060900 [exp]	20.49	0.8823
AT2G21340			MATE efflux family protein (.1...		Potri.009G122600 [exp]	23.36	0.9236

Compare expression of checked genes

Potri.019G073000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.