Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71530 740 / 0 Protein kinase superfamily protein (.1.2) AT1G33770 660 / 0 Protein kinase superfamily protein (.1) AT4G10010 632 / 0 Protein kinase superfamily protein (.1) AT1G53050 616 / 0 Protein kinase superfamily protein (.1) AT1G09600 590 / 0 Protein kinase superfamily protein (.1) AT1G57700 551 / 0 Protein kinase superfamily protein (.1) AT1G54610 540 / 0 Protein kinase superfamily protein (.1.2.3) AT5G50860 533 / 0 Protein kinase superfamily protein (.1) AT1G03740 519 / 3e-176 Protein kinase superfamily protein (.1.2) AT5G44290 508 / 2e-173 Protein kinase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G100100 [exp] 1048 / 0 AT1G71530 722 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G003700 [exp] 635 / 0 AT1G09600 703 / 0.0 Protein kinase superfamily protein (.1) Potri.011G119400 [exp] 634 / 0 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.004G226900 [exp] 625 / 0 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.001G399700 [exp] 603 / 0 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.012G103900 [exp] 562 / 0 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1) Potri.015G103300 [exp] 561 / 0 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.008G204400 [exp] 559 / 0 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G045500 [exp] 551 / 0 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001285 [exp] 687 / 0 AT1G71530 648 / 0.0 Protein kinase superfamily protein (.1.2) Lus10009464 [exp] 662 / 0 AT1G71530 652 / 0.0 Protein kinase superfamily protein (.1.2) Lus10028890 [exp] 607 / 0 AT1G09600 631 / 0.0 Protein kinase superfamily protein (.1) Lus10025773 [exp] 589 / 0 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1) Lus10035892 [exp] 586 / 0 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10012805 [exp] 553 / 0 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033684 [exp] 546 / 0 AT1G53050 668 / 0.0 Protein kinase superfamily protein (.1) Lus10008925 [exp] 545 / 0 AT1G09600 643 / 0.0 Protein kinase superfamily protein (.1) Lus10001715 [exp] 544 / 0 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10004144 [exp] 543 / 0 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.019G073100.1 pacid=42773958 polypeptide=Potri.019G073100.1.p locus=Potri.019G073100 ID=Potri.019G073100.1.v4.1 annot-version=v4.1 ATGGGCAGCATTTGCTCAAAACGAGCTGAAGAAGAAGATGTAAATATCAATAAGAATGAAAGGCAGATAGAGGTGGATAAGTCTTCTGTGCAATTGGTTG CTCCCACAATATTCATTAAAGAAGAGATTCTGGTAGATGTTCTTGGCCGAAAAGATGCTCGTCATGTGTCGAAGGAAAATGTTGGGAGTGTTATTGATTT ATTGGAAGGAGAAAAGAAAACGAAACTTGTTGATGAGAAGAAGAAAGGCCATCATGGATCGGTAGCAATGGATTCAGAGTCCATTGATGACCAACCACGT ATCATGAGTAGGATGATTAGCATGCGTCCTTCCGCTGAAAGGGAAGCATGGCCACAATGGTTAACAGCAGCTGCTGGAGAAGCCGTCAAAGGGTGGCTGC CTCGACGAGCAGACTCATTTGAGAAGCTAGACAAGATTGGACAAGGAACTTACAGCACTGTATTCAAGGCTCGTGACCTTGAAACTGGAAAAATTGTTGC AATGAAGAAGGTGCGGTTTGTCAATATGGATCCGGAAAGTGTCCGTTTCATGGCTAGGGAAATCGTTATTTTGCGCAGGCTTGACCATCTGAATGTTATG AAACTCGAAGGAATAGTCACTTCGTGGATGTCAGGGAGCTTGTACCTTGTCTTTGAGTATATGGAACATGACCTTGCTGGGCTTGCAGCAAATCCTAGCA TCAAGTATACAGAAGCTCAGATAAAGTGCTATATGCAACAACTTCTACGTGGACTTGAACACTGCCATAAACACGGTGTCTTGCACCGAGACATCAAGGG CTCAAATCTTCTAATAAACAATGATGGAGTTCTCAAGATTGCAGACTTTGGTCTGGCAACTTCTTATCAGCCTGATCAGAGTCTGCCTTTAACAAGTCGT GTAGTAACTCTTTGGTATAGGGCACCGGAGCTTTTGCTTGGTGCTACAGAGTATGGACCTGCTATTGATATGTGGAGTGCTGGCTGCATTCTTGCTGAAT TATTCACTGGCAAGCCTATCATGCCTGGAAGAACAGAAGTAGAGCAAATGCATAAGATTTTTAAGCTTTGTGGCTCGCCCTCTGAGGCCTACTGGACGAA AAAGAAGTTTCCACATGCAACTAGTTTCAAGCCTCAGCAACCTTACATCCGCCGTACTGCTGAGACATTCAAAAATTTCCCTCCTTCAGCTTTGACACTT GTTGATAAGCTCCTGTCAATGGAACCACAAGATAGAGGATCAGCCACTTCAGCTCTTCGAAGTGAGTTCTTCAGAATAGAACCCCTCCCGTCTGATCCAT CTAGTCTACCAAAATATCCTCCAAGCAAGGAACTGGATGCCAAGATGCGAGATCAGGAAGCGAGAAGGCAAAAAGCAGAGGCAGTAAAAGGACGAGGACC AGAATCTGTTAGAAGGGGTTCAGGAGATACTAAGAAAGCTCCCACTTCAGAATTCACTGCTCAGGGACAGCCAAAAACTATATGTAGCAGTTATAAATAT AATATCCAGGAGGATGGAGGTTCTAGCTTCCGAATTGAGCCTCCTAGAGTATCGAAGAAGAATGGTCTCGAGCATTCTGCTTCAGTGATTCACCATTCTG CAGTAGGATTGTCGTTAAATAAGAGTGTAGATTGTACAGAAAATAATCCAGAATTGAGGTCAAAGAAATCTCGTGTGTCGCAATCAGGGGAGATATCTAG CTCCTCCCTTAAGAAGAAGGAACGAGCTCCTAGCATAGATTCTTCAGCGGGGTTTGTTCCCAGGAAAACCAGGATCCATTACTCTGGACCACTGATGCCT CCTGGGGGAAACATGGAAGAAATACTCAAAGAGCATGAGAGACAGATCCAGCAGGCTGTGCGTAAAGCACGTCTCGAGAAATCAGGGACCAAAGATAACC TTGACGTTTATGAGCAGCTACATCATAACAGATGA
AA sequence Show only first row Show all	>Potri.019G073100.1 pacid=42773958 polypeptide=Potri.019G073100.1.p locus=Potri.019G073100 ID=Potri.019G073100.1.v4.1 annot-version=v4.1 MGSICSKRAEEEDVNINKNERQIEVDKSSVQLVAPTIFIKEEILVDVLGRKDARHVSKENVGSVIDLLEGEKKTKLVDEKKKGHHGSVAMDSESIDDQPR IMSRMISMRPSAEREAWPQWLTAAAGEAVKGWLPRRADSFEKLDKIGQGTYSTVFKARDLETGKIVAMKKVRFVNMDPESVRFMAREIVILRRLDHLNVM KLEGIVTSWMSGSLYLVFEYMEHDLAGLAANPSIKYTEAQIKCYMQQLLRGLEHCHKHGVLHRDIKGSNLLINNDGVLKIADFGLATSYQPDQSLPLTSR VVTLWYRAPELLLGATEYGPAIDMWSAGCILAELFTGKPIMPGRTEVEQMHKIFKLCGSPSEAYWTKKKFPHATSFKPQQPYIRRTAETFKNFPPSALTL VDKLLSMEPQDRGSATSALRSEFFRIEPLPSDPSSLPKYPPSKELDAKMRDQEARRQKAEAVKGRGPESVRRGSGDTKKAPTSEFTAQGQPKTICSSYKY NIQEDGGSSFRIEPPRVSKKNGLEHSASVIHHSAVGLSLNKSVDCTENNPELRSKKSRVSQSGEISSSSLKKKERAPSIDSSAGFVPRKTRIHYSGPLMP PGGNMEEILKEHERQIQQAVRKARLEKSGTKDNLDVYEQLHHNR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71530			Protein kinase superfamily pro...		Potri.019G073100 [exp]	0	1
AT5G42340		PUB15	Plant U-Box 15 (.1)		Potri.003G214100 [exp]	6.32	0.7864
AT5G62280			Protein of unknown function (D...		Potri.002G147200 [exp]	73.74	0.7573
AT4G34588		CPuORF2	conserved peptide upstream ope...		Potri.009G119650 [exp]	78.34	0.7542
AT5G53930			unknown protein		Potri.001G397001 [exp]	83.16	0.6961
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Potri.002G238600 [exp]	87.85	0.7544
AT1G15240			Phox-associated domain;Phox-li...		Potri.003G053200 [exp]	95.01	0.7523
AT3G29310			calmodulin-binding protein-rel...		Potri.004G124301 [exp]	107.51	0.7516
AT4G21300			Tetratricopeptide repeat (TPR)...		Potri.011G156800 [exp]	115.15	0.7093
AT1G55750			BSD domain (BTF2-like transcri...		Potri.007G107400 [exp]	127.48	0.6794
AT4G33870			Peroxidase superfamily protein...		Potri.003G053700 [exp]	151.17	0.7294

Compare expression of checked genes

Potri.019G073100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.