Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59970 213 / 7e-67 Matrixin family protein (.1) AT1G70170 213 / 1e-66 MMP matrix metalloproteinase (.1) AT1G24140 207 / 4e-64 Matrixin family protein (.1) AT4G16640 192 / 2e-58 Matrixin family protein (.1) AT2G45040 166 / 4e-49 Matrixin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G073400 [exp] 558 / 0 AT1G70170 215 / 2e-67 matrix metalloproteinase (.1) Potri.019G073800 [exp] 552 / 0 AT1G70170 223 / 1e-70 matrix metalloproteinase (.1) Potri.013G100400 [exp] 430 / 6e-153 AT1G59970 247 / 4e-80 Matrixin family protein (.1) Potri.013G033200 [exp] 337 / 5e-116 AT1G24140 246 / 2e-79 Matrixin family protein (.1) Potri.008G027600 [exp] 268 / 4e-89 AT1G59970 213 / 8e-67 Matrixin family protein (.1) Potri.008G027500 [exp] 253 / 3e-83 AT1G59970 219 / 2e-69 Matrixin family protein (.1) Potri.008G027700 [exp] 251 / 2e-82 AT1G59970 219 / 5e-69 Matrixin family protein (.1) Potri.008G027975 [exp] 250 / 6e-82 AT1G59970 216 / 4e-68 Matrixin family protein (.1) Potri.008G027900 [exp] 243 / 2e-79 AT1G59970 192 / 9e-59 Matrixin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035221 [exp] 207 / 3e-65 AT1G24140 216 / 1e-67 Matrixin family protein (.1) Lus10030662 [exp] 208 / 9e-65 AT1G59970 338 / 9e-115 Matrixin family protein (.1) Lus10005605 [exp] 205 / 1e-64 AT1G24140 223 / 9e-71 Matrixin family protein (.1) Lus10039464 [exp] 202 / 3e-63 AT1G24140 224 / 3e-71 Matrixin family protein (.1) Lus10014512 [exp] 197 / 2e-61 AT1G59970 221 / 6e-70 Matrixin family protein (.1) Lus10032175 [exp] 192 / 2e-59 AT1G59970 224 / 3e-71 Matrixin family protein (.1) Lus10004728 [exp] 185 / 7e-56 AT4G16640 350 / 2e-119 Matrixin family protein (.1) Lus10028955 [exp] 179 / 1e-53 AT4G16640 360 / 3e-123 Matrixin family protein (.1) Lus10007478 [exp] 166 / 2e-48 AT4G16640 345 / 2e-117 Matrixin family protein (.1) Lus10010719 [exp] 152 / 7e-44 AT1G70170 305 / 3e-102 matrix metalloproteinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [poplar] [flax] Peptidase_MA PF00413 [poplar] [flax] Peptidase_M10 Matrixin CL0244 [poplar] [flax] PGBD PF01471 [poplar] [flax] PG_binding_1 Putative peptidoglycan binding domain
Representative CDS sequence Show only first row Show all	>Potri.019G073700.2 pacid=42773997 polypeptide=Potri.019G073700.2.p locus=Potri.019G073700 ID=Potri.019G073700.2.v4.1 annot-version=v4.1 ATGGCTCCTAAACTTTCCCAACTTTTATCAGCAATCCTCGTTATCTTTTCTATCCAGTCCTTCAGAGGTCAGGCAAGAACCTTGAAACCCGAGCATCGGC AATCTTTTAGCAGCTTCCTTCAAGGGCTGGAGGGGGTTCAAAAGGGCCAAACTGTGCAAGGGCTTGTTGAGCTCAAACAGTACCTCAAAAAGTTTGGGTA CTACCCAAGTGATATCACTCTCACAAGCAGTGATTTTGATGACCACTTGGAGCTAGCACTCAAAACATACCAAGAATATTTTCACCTGAATGTTACTGGT AACCTTGACTCTAGTACCATACAACAAATGATGATTCCACGATGTGGAATGCCTGATATCATAAACACTCCGTCCACTAAACCGAACAGCACTACATCAA AACACAACAAGTTCCACATGGTTGTTCATTATGATTTCGGGACACGAAAGTGGCCACCTTCCAAGTATGCTCTGACCTACAGATTTGGCTCGGGTGTCCA AGTTGTTGGTTCGGACACCTTGAGGTCGGTCTGCTCAAACGCTTTCCAAACATGGGCAAAGGTTTCTCCATTCACTTTCCAGGAGGCGACTGACGGTGCA TCAGCAGATATTGTAATTGAGTTCTTCAGCGGCGATCATGGGGATCAGGATCCTTTTGATGGACCAGGGAAACAACTGGCTCATGGTTTTTTTCCACAAG ACGGCCGTCTCCATTACGATGCAGACGAGAACTGGAGCACTGACCCCGCAATGGATCAAACTGACCTGGAATCCGTTACTGTTCATGAAATAGGACATCT GCTTGGCCTTTATCATAGTAAAGATCATCCCGAAGCCATCATGTATCCAACGATAGCACCTGGAAAGAAGAAAAGAGATCTCGCCCAGGATGATATTGAT GGGATACATGCCCTCTATTCCAATTAA
AA sequence Show only first row Show all	>Potri.019G073700.2 pacid=42773997 polypeptide=Potri.019G073700.2.p locus=Potri.019G073700 ID=Potri.019G073700.2.v4.1 annot-version=v4.1 MAPKLSQLLSAILVIFSIQSFRGQARTLKPEHRQSFSSFLQGLEGVQKGQTVQGLVELKQYLKKFGYYPSDITLTSSDFDDHLELALKTYQEYFHLNVTG NLDSSTIQQMMIPRCGMPDIINTPSTKPNSTTSKHNKFHMVVHYDFGTRKWPPSKYALTYRFGSGVQVVGSDTLRSVCSNAFQTWAKVSPFTFQEATDGA SADIVIEFFSGDHGDQDPFDGPGKQLAHGFFPQDGRLHYDADENWSTDPAMDQTDLESVTVHEIGHLLGLYHSKDHPEAIMYPTIAPGKKKRDLAQDDID GIHALYSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G59970			Matrixin family protein (.1)		Potri.019G073700 [exp]	0	1
AT2G33480	NAC	ANAC041	NAC domain containing protein ...		Potri.017G031600 [exp]	1.00	0.8818	NAC125
AT4G08850			Leucine-rich repeat receptor-l...		Potri.013G037533 [exp]	5.65	0.7634
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Potri.015G002800 [exp]	14.69	0.7474
					Potri.003G153266 [exp]	20.04	0.7526
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Potri.018G019700 [exp]	20.37	0.7628
					Potri.003G153332 [exp]	20.97	0.7469
AT1G70170		MMP	matrix metalloproteinase (.1)		Potri.019G073400 [exp]	22.75	0.7846
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.006G109100 [exp]	23.66	0.7497
					Potri.014G013800 [exp]	39.34	0.7472
AT4G08850			Leucine-rich repeat receptor-l...		Potri.015G123700 [exp]	42.98	0.7354

Compare expression of checked genes

Potri.019G073700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.