Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71500 325 / 3e-112 Rieske (2Fe-2S) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001278 [exp] 325 / 8e-112 AT1G71500 335 / 3e-116 Rieske (2Fe-2S) domain-containing protein (.1) Lus10009471 [exp] 322 / 6e-111 AT1G71500 333 / 3e-115 Rieske (2Fe-2S) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0516 [poplar] [flax] ISP-domain PF13806 [poplar] [flax] Rieske_2 Rieske-like [2Fe-2S] domain
Representative CDS sequence Show only first row Show all	>Potri.019G073900.2 pacid=42773904 polypeptide=Potri.019G073900.2.p locus=Potri.019G073900 ID=Potri.019G073900.2.v4.1 annot-version=v4.1 ATGGCCAAAACCACCACTACTCCCTCCCATCTCACTCCTTTTACTCAAAACCACTCCTTCAACTCTCCACCGCGAACCACCATCTCTTTTTGGCACCGAC CCACTTACCCTCCATCCTTTGCATTGCCCATAAACTGCCATTTTGTTGCTCCTTCATGTAAGACACTCAGGTCTAACTGTAGAATAGTGTGCAAGGCAAC AGAGGTGTCGTTGACTGAAGAGTCACCGTCTTCTGGTGGAGAGAATTGGGTTCCAGTTGTGCCTCTGACTGCCCTGCCTAAGGGAGAAAGAAGAGTGATT ATTCAAGATGGAGAGACTATACTGTTGCTATGGTATAAAGACCAGGTTTATGCAATTGAGAATCGGTCTCCTGCAGAAGGGGCCTATACTGAAGGTCTGC TTAATGCCAAGCTCACACAGGATGGTTGCATAGTTTGTCCATCAACTGATAGCACTTTTGATCTTCGGACTGGAGCCATCAAAGAATGGTATCCAAATAA CCCTGTGCTCAGAGTTCTCACACCTGCTCTGAGAACGCTTTTCGTGTATCCTGTGAAAACTGATGAAGAAAATATTTACATCAGTATCAGAGGAGGTGTA AAATCTGATGTGTCTGCTGAGATTGTCTTCAGTGGGAAGGCTCAACCTGGTGTGACAGCATCTGATGTCAACGTGGATGAGGTGAGAATGGTAATCGATG AGGGTCAAGAGGGGTTCGGTTTCACCAGCAAGAATGAATTGATAAATGGGCAGGCAGCCATAATTGGCTTCTTGTTTTTGATAGATTTTGAACTCTTGAC TGGTAAAGGTGTTCTCAAGGGAACAGGCTTCCTGGACTTCCTATATGCTGCTTCTAATGGTTTCAATTAA
AA sequence Show only first row Show all	>Potri.019G073900.2 pacid=42773904 polypeptide=Potri.019G073900.2.p locus=Potri.019G073900 ID=Potri.019G073900.2.v4.1 annot-version=v4.1 MAKTTTTPSHLTPFTQNHSFNSPPRTTISFWHRPTYPPSFALPINCHFVAPSCKTLRSNCRIVCKATEVSLTEESPSSGGENWVPVVPLTALPKGERRVI IQDGETILLLWYKDQVYAIENRSPAEGAYTEGLLNAKLTQDGCIVCPSTDSTFDLRTGAIKEWYPNNPVLRVLTPALRTLFVYPVKTDEENIYISIRGGV KSDVSAEIVFSGKAQPGVTASDVNVDEVRMVIDEGQEGFGFTSKNELINGQAAIIGFLFLIDFELLTGKGVLKGTGFLDFLYAASNGFN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71500			Rieske (2Fe-2S) domain-contain...		Potri.019G073900 [exp]	0	1
AT2G23670		YCF37	homolog of Synechocystis YCF37...		Potri.007G034300 [exp]	1.00	0.9920
AT5G65220			Ribosomal L29 family protein ...		Potri.007G093700 [exp]	2.44	0.9892
AT2G34860		EDA3	embryo sac development arrest ...		Potri.001G009800 [exp]	2.82	0.9864
AT2G24090			Ribosomal protein L35 (.1)		Potri.018G102700 [exp]	3.46	0.9885
AT5G42070			unknown protein		Potri.001G089500 [exp]	4.24	0.9824
AT5G35100			Cyclophilin-like peptidyl-prol...		Potri.006G189900 [exp]	5.47	0.9846
AT5G30510		ARRPS1, RPS1	ribosomal protein S1 (.1)		Potri.008G101100 [exp]	6.70	0.9859
AT2G43030			Ribosomal protein L3 family pr...		Potri.013G070100 [exp]	7.07	0.9821
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.003G189100 [exp]	7.14	0.9689
AT3G56150		ATTIF3C1, ATEIF...	eukaryotic translation initiat...		Potri.016G063500 [exp]	8.71	0.9630	TIF3.8

Compare expression of checked genes

Potri.019G073900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.