Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71490 878 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G22830 753 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G08070 431 / 6e-141 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 420 / 3e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 375 / 8e-120 MEF22 mitochondrial editing factor 22 (.1) AT4G18750 376 / 2e-118 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 379 / 1e-117 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G68930 370 / 2e-117 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G23330 367 / 1e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30700 364 / 1e-114 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G040100 [exp] 432 / 4e-141 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G041200 [exp] 431 / 2e-139 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G136200 [exp] 406 / 2e-131 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.013G058900 [exp] 407 / 5e-128 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 399 / 7e-128 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 387 / 6e-123 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 384 / 5e-121 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G103600 [exp] 374 / 3e-120 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G187800 [exp] 383 / 2e-119 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009487 [exp] 899 / 0 AT1G71490 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003508 [exp] 467 / 2e-158 AT1G71490 415 / 5e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028593 [exp] 395 / 1e-127 AT5G16860 879 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 395 / 9e-127 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018897 [exp] 401 / 2e-123 AT5G16860 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022890 [exp] 387 / 2e-123 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030908 [exp] 393 / 3e-121 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10018978 [exp] 389 / 3e-121 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030053 [exp] 380 / 3e-121 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027008 [exp] 374 / 4e-121 AT1G71490 335 / 7e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.019G074700.2 pacid=42774103 polypeptide=Potri.019G074700.2.p locus=Potri.019G074700 ID=Potri.019G074700.2.v4.1 annot-version=v4.1 ATGCCTTCTTCTTCTCCGCGTTTTGTGTTAAGAGGACTTTCTGTAAGTCAAATAAAAAAATGCATACCTAAACAAGGGAAACAAAGTGCCATAGTAGTAG GTGTTCAAAGCAATTACCCTGTTGTAGAAACGGATGCATCTAACAATGTTTCTATGATAGATAACCTTTTTAATTCTCTCAAAGACCTTGCAAGGAAGGG ACATTTATTAAAAGCATTTGAAACCTTCTCTCTGATCAAGCTCCATGCCTCTTCAGCTAATCGTGATGCTATCTTACATTCAATTTCTTCATTGCTTTAC TCTTGTACCAACCTTAAATCACTCCCGCAGGGTAAACAGCTCCATGCCCACACCATCTCTTTGGGATTTGAAAATCATCTCGTTTTGGTTCCCAAGCTTG TCACATTTTACTCGAGCTTCAGTCTCCTAGCTGATGCGCACACCATCACTGTGAATTCAGATATTGTGAACCCTTTGCCTTGGAACTTGCTTATCTCTTC CTATGTTAACAATGGGTTACATGGAGAGGCTCTTTCAGCATATAGAGAAATGGTACATAAAGGGGTTAGACCTGATAATTTCACTTATCCATCAGTCCTT AAGGCTTGCGGTGAAAAATTGGATCTGGACTTTGGGAGGGAGGTACATGAGTCTATTAATGCTGCCTATGGGCACAGATGGAACCTGTACGTGCATAATT CTTTGGTTTCCATGTATGGAAAATTTGGGGAATTGGATGCTGCTCGTCGCTTATTTAATCAAATGCCAGAGAGAGATGCTGTTTCTTGGAACGGAATAAT CAGTAATTATGCCTCCAGGGGCCTGTGGAAGGAAGCATTTGAACTGTTTGAAGAAATGAGACTAGCAGGCGCAGAAGTGAATATTATAACTTGGAACACC ATAGCAGGAGGGTGCGTACAGACAAGAAATTTTAAAGGGGCACTTGAGTTGCTTTCTCAGATGAGAAGGTGTGACATTGATTTGGATCCAGTGGCAATGA TTATTGGCTTAGGTGCATGTTCACACATTGGGGCCATAAAGTTAGGAACAGTGATTCATGCTTCTGCAATTCGTAGTTGTTTCGATGGATTTGATAATGT AAGAAATGCACTGATAACCATGTATTCACGGTGTAAAGACCTCAGGCATGCTGACATTTTATTTAAATCAATTAAAACTAAGAGCTTAACTACTTGGAAC TCCATGCTTTCTGGTTACACTCACATGGACCGATCTGAGGAAGCCTCGTTCCTGTTCAGGGAGATGCTGTTTTCTGGAATTGAACCTAATTATGTGACTA TTGCAAGCATTCTTCCCCATTGTGCTCGAGTGGCAAATTTACAACAAGGGAAGGAGTTCCATTGTTACATTATGAGGCGAGAAGGGTTTGAGGACTATTT ATTGCTTTGGAATTCCCTCGTTGAGATGTATGCAAGATCTGGAAAGGTTTTATCAGCAAAAAGAGTGTTTGACTCATTGAGAAGGAGGGATAAAGTGACT TATACCTCCTTGATTGCTGGGTATGGTATACAGGGAGAGGGGAAGACTGCACTAAAATTGTTTGATGAAATGATCAAACATCGGATTAAACCAGACCAGG TCACCATGGTGGCAGTTCTATCTGCGTGTAGCCATTCTGGTCTAGTAACTGAAGGAAACGTGTTGTTTGAAAAGATGTCAACTCTCTATGGGATAGTTCC CGCAGTAGAGCACTTTTCATGCATGGTTGATCTCTTTGGGAGAGCTGGATTGTTAAATAAAGCAAAGAAAGTAATTACCAGTATGCCTTACAGGCCAACC ACTGCTATGTGGGCCACTCTTGTAGGCGCCTGCCGGATCCATGGAAACACAGAGATAGGGGAATGGGCAGCTGAGAAATTGCTGGAAATGAAGCCTGAAA ATCCAGGTTACTATGTGTTGATTGCTAATATGCATGCTGCTGCTGGTCGTTGGAGCAAGCTGGCAGAAGTCAGGACTTACATGAGGGATTTAGGTGTGAG GAAGGCCCCTGGATGTACCTGGGTTGATGTCGGCTCTGGATTCTCCCCCTTTGTGGTTGGTGACACTTCCAAACACAACTCAAATGATCTTTACGAATTG TTGGAGGGGTTGACTGATCTAATGAAAGATGCCGGTTATGTTGCCGGAGAAAATTTTAGTTCCGAAGATGAAGTCTTGGAGGAGATAGAATGCTGCAACA TGTGA
AA sequence Show only first row Show all	>Potri.019G074700.2 pacid=42774103 polypeptide=Potri.019G074700.2.p locus=Potri.019G074700 ID=Potri.019G074700.2.v4.1 annot-version=v4.1 MPSSSPRFVLRGLSVSQIKKCIPKQGKQSAIVVGVQSNYPVVETDASNNVSMIDNLFNSLKDLARKGHLLKAFETFSLIKLHASSANRDAILHSISSLLY SCTNLKSLPQGKQLHAHTISLGFENHLVLVPKLVTFYSSFSLLADAHTITVNSDIVNPLPWNLLISSYVNNGLHGEALSAYREMVHKGVRPDNFTYPSVL KACGEKLDLDFGREVHESINAAYGHRWNLYVHNSLVSMYGKFGELDAARRLFNQMPERDAVSWNGIISNYASRGLWKEAFELFEEMRLAGAEVNIITWNT IAGGCVQTRNFKGALELLSQMRRCDIDLDPVAMIIGLGACSHIGAIKLGTVIHASAIRSCFDGFDNVRNALITMYSRCKDLRHADILFKSIKTKSLTTWN SMLSGYTHMDRSEEASFLFREMLFSGIEPNYVTIASILPHCARVANLQQGKEFHCYIMRREGFEDYLLLWNSLVEMYARSGKVLSAKRVFDSLRRRDKVT YTSLIAGYGIQGEGKTALKLFDEMIKHRIKPDQVTMVAVLSACSHSGLVTEGNVLFEKMSTLYGIVPAVEHFSCMVDLFGRAGLLNKAKKVITSMPYRPT TAMWATLVGACRIHGNTEIGEWAAEKLLEMKPENPGYYVLIANMHAAAGRWSKLAEVRTYMRDLGVRKAPGCTWVDVGSGFSPFVVGDTSKHNSNDLYEL LEGLTDLMKDAGYVAGENFSSEDEVLEEIECCNM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71490			Tetratricopeptide repeat (TPR)...		Potri.019G074700 [exp]	0	1
AT1G72280		AERO1	endoplasmic reticulum oxidored...		Potri.011G139900 [exp]	3.16	0.8398	Pt-AERO1.2
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.005G011000 [exp]	6.32	0.8045
AT2G40360			Transducin/WD40 repeat-like su...		Potri.003G009600 [exp]	8.48	0.8403
AT3G47930		ATGLDH	"L-galactono-1,4-lactone dehyd...		Potri.016G040300 [exp]	10.90	0.8031	Pt-ATGLDH.1
AT1G53720		ATCYP59, CYP59	cyclophilin 59 (.1)		Potri.005G097500 [exp]	12.48	0.7370
AT1G68080			2-oxoglutarate (2OG) and Fe(II...		Potri.008G139000 [exp]	15.16	0.7552
AT4G12750			Homeodomain-like transcription...		Potri.014G173300 [exp]	16.88	0.8120
AT3G10630			UDP-Glycosyltransferase superf...		Potri.008G018200 [exp]	19.79	0.8086
AT5G26760			unknown protein		Potri.015G010900 [exp]	20.78	0.8037
AT5G06810			Mitochondrial transcription te...		Potri.016G048400 [exp]	21.42	0.7896

Compare expression of checked genes

Potri.019G074700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.