Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71480 249 / 2e-84 Nuclear transport factor 2 (NTF2) family protein (.1) AT5G41470 121 / 2e-33 Nuclear transport factor 2 (NTF2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G100600 [exp] 246 / 2e-83 AT1G71480 199 / 5e-65 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.001G100500 [exp] 111 / 8e-30 AT5G41470 213 / 2e-68 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.003G131500 [exp] 107 / 4e-28 AT5G41470 210 / 5e-67 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.016G013200 [exp] 63 / 5e-12 AT4G22370 114 / 6e-32 unknown protein Potri.002G070800 [exp] 56 / 2e-09 AT5G41470 85 / 2e-19 Nuclear transport factor 2 (NTF2) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041048 [exp] 266 / 4e-91 AT1G71480 238 / 7e-80 Nuclear transport factor 2 (NTF2) family protein (.1) Lus10006176 [exp] 134 / 4e-36 AT4G10030 238 / 7e-73 alpha/beta-Hydrolases superfamily protein (.1) Lus10024664 [exp] 99 / 1e-24 AT5G41470 196 / 2e-61 Nuclear transport factor 2 (NTF2) family protein (.1) Lus10032294 [exp] 98 / 1e-24 AT5G41470 177 / 1e-54 Nuclear transport factor 2 (NTF2) family protein (.1) Lus10003793 [exp] 50 / 2e-07 AT4G22370 86 / 4e-22 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0051 [poplar] [flax] NTF2 PF12680 [poplar] [flax] SnoaL_2 SnoaL-like domain
Representative CDS sequence Show only first row Show all	>Potri.019G074800.1 pacid=42773387 polypeptide=Potri.019G074800.1.p locus=Potri.019G074800 ID=Potri.019G074800.1.v4.1 annot-version=v4.1 ATGCTGATGAGCTCCACCGCATCATCTTTCTTTTCTTCAAAACCTCTTCCCCTACACAGGATTCCCACTCTATCTCGTCCCCAGCTAATCTCCACTCAAC ATGCTAACATTTTCACCTCTAGCAGCAAGGCATGGGCTACAAAGAACACGATCAAAGCCTCCTCATCAGAAAATCAAACGGTCACCGTTGCACCATCCGT GGAATCTGCATCAGATGTCGTGAGGAGCTTCTATGAAGGAATCAACGGCCACGATTTGGACTCCGTGGAGGAGCTTATTGCCGAGAATTGTGTGTACGAG GATCTTATCTTTCCTCGTCCATTCGTTGGTCGTAAGGCAATACTGGAGTTCTTCAACAAGTTCATTGATACTGTAAGCAAAGACCTCCAGTTTGTGATTG ATGATATCTCTAACGAGGATTCCTTTGCGGTCGGGGTTACATGGCATTTAGAATGGAAGGGCAAGTCTTTCCCATTTAGCAAAGGATGCAGCTTTTATCG GCTAGATGCTGTGAATGGCAAGAGGCAAATAATTTATGGACGAGACAGTGTTGAGCCTGCAGTCAAGCCTGGGGAGGCTGCTTTGGTTGCTATCAGGGGT GTAACTTGGCTGCTGCAGCGATTTCCTCAATTAGCAGATCAGCTGTGA
AA sequence Show only first row Show all	>Potri.019G074800.1 pacid=42773387 polypeptide=Potri.019G074800.1.p locus=Potri.019G074800 ID=Potri.019G074800.1.v4.1 annot-version=v4.1 MLMSSTASSFFSSKPLPLHRIPTLSRPQLISTQHANIFTSSSKAWATKNTIKASSSENQTVTVAPSVESASDVVRSFYEGINGHDLDSVEELIAENCVYE DLIFPRPFVGRKAILEFFNKFIDTVSKDLQFVIDDISNEDSFAVGVTWHLEWKGKSFPFSKGCSFYRLDAVNGKRQIIYGRDSVEPAVKPGEAALVAIRG VTWLLQRFPQLADQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71480			Nuclear transport factor 2 (NT...		Potri.019G074800 [exp]	0	1
AT2G01620		MEE11	maternal effect embryo arrest ...		Potri.010G108600 [exp]	3.00	0.9397
AT1G34000		OHP2	one-helix protein 2 (.1)		Potri.005G196100 [exp]	5.00	0.9465	OHP2.1
AT5G58070		ATTIL	temperature-induced lipocalin ...		Potri.018G110800 [exp]	6.32	0.9256
AT3G15580		APG8H, ATG8I	AUTOPHAGY 8I, AUTOPHAGY 8H, Ub...		Potri.002G189450 [exp]	8.48	0.9397
AT3G10350			P-loop containing nucleoside t...		Potri.010G225100 [exp]	12.32	0.9431
AT3G19900			unknown protein		Potri.010G169700 [exp]	19.07	0.9280
AT5G49940		ATCNFU2, NFU2	CHLOROPLAST-LOCALIZED NIFU-LIK...		Potri.004G222600 [exp]	24.61	0.9281
AT4G22240			Plastid-lipid associated prote...		Potri.004G003200 [exp]	28.70	0.9274	Pt-CHRC.3
AT4G31980			unknown protein		Potri.001G046000 [exp]	29.93	0.9188
AT4G25370			Double Clp-N motif protein (.1...		Potri.012G129800 [exp]	32.63	0.9284

Compare expression of checked genes

Potri.019G074800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.