Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71460 886 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G11290 332 / 5e-103 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 333 / 7e-103 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G35130 327 / 4e-101 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 316 / 3e-96 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21300 303 / 2e-91 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39350 298 / 4e-91 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G33680 292 / 1e-88 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09040 297 / 3e-88 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G30700 293 / 3e-88 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G191000 [exp] 347 / 1e-108 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 336 / 3e-103 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 330 / 2e-101 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G215500 [exp] 320 / 3e-97 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G006800 [exp] 311 / 3e-95 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.011G156800 [exp] 310 / 2e-94 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G178200 [exp] 304 / 2e-92 AT4G35130 919 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G067000 [exp] 302 / 1e-91 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G161800 [exp] 300 / 2e-91 AT2G03380 786 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041049 [exp] 899 / 0 AT1G71460 796 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10006174 [exp] 531 / 0 AT1G71460 459 / 2e-157 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10006175 [exp] 327 / 2e-107 AT1G71460 299 / 1e-96 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10017446 [exp] 343 / 6e-107 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001220 [exp] 332 / 3e-102 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 325 / 2e-99 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038400 [exp] 319 / 2e-97 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 315 / 2e-95 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008967 [exp] 313 / 4e-95 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 313 / 1e-94 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.019G075400.1 pacid=42774667 polypeptide=Potri.019G075400.1.p locus=Potri.019G075400 ID=Potri.019G075400.1.v4.1 annot-version=v4.1 ATGGAAGCCATGCAATCCCCTTCGCTTTCTGTTCACCTCCATTGTTTCCCTCAAAATCCTCTCAACATCAATATTACCCACAGACAATTCTCCAAAATCA AATCTTCTACACAAACCCAACCAGTCCAAACCCAAAATCCCAACAAAAAACATCAACAATTCGATGAAAGAGATGCATTTCCAGCTTCGTTACCACTCCA CAAGAAAAACCCACAAGCAATTTACAAAGATATTCAAAGATTTTCCAGGAAAAATCAGCTCAAAGATGCACTCATCATTATGGACTACATGGACCAACAA GGCATCCCAGTTAACCCCACTACTTTTTCTGCCCTTATAGCTGCTTGTATTCGATCGAAATCTTTAACCAAAGCCAAAGAAATACACACGCATTTACGCA TAAATGGGCTTCAAAACAATGAGTTCTTGCGTACAAAACTTGTCCACATGTACACTTCCTGTGGTTCTATTGAGGATGCCAAAAGCGTGTTTGATGAGTG CACTTCTACTGCTACTGTGTATCCATGGAATGCCTTGATTAGAGGGACTGTGATATCAGGTAAAAAAAGATACGGGGACGTGCTTAGTGCTTATCAAGAA ATGAGAGTAAATGGTGTTGAATTGAATGAGTATACTTTCTCCAATGTCATTAAGAGTTTTGCAGGCGCTTCGGCGCTGAAACAAGGGTTTAAGACTCATG CCATTATGATAAAGAATGGGATGATTAGTAGTGCAGTTCTTAGGACTTGTTTGATTGATATGTATTTTAAATGCGGCAAGACTAGGCTTGCGCATAACGT GTTTGAAGAATTGCTTGAAAGAGATATTGTTGCGTGGGGTGCGATGATTGCTGGGTTTGCACATAATAGGCGTCAATGGGAAGCTTTGGATTATGTTAGG TGGATGGTAAGTGAAGGGATGTATCCTAATTCTGTTATTATAACTAGTATTCTTCCGGTGATAGGAGAAGTATGGGCGAGGAGGTTAGGCCAGGAGGTTC ATTGTTATGTTTTGAAGATGAAGGGTTATTCAAGGGAGTTATCGATTCAATCTGGGTTAATTGATATGTATTGCAAATGTGGGGACATGGGTTCAGGGAG GCGTGTGTTTTATGGATCGAGGGAAAGGAATGTTGTTTCTTGGACTGCTTTGATGTCTGGTTATGTGTCTAATGGGAGGCTTGAGCAGGCGTTGAGATCA GTTGTTTGGATGCAGCAAGAAGGGTGTAGGCCTGATGTGGTCACGGTTGCAACTGTAATTCCAGTTTGTGCTAAGTTGAAGACTCTGAAACATGGGAAGG AAATTCATGCTTTTTCTGTCAAGAAATTGTTCTTGCCAAATGTATCTCTCACCACTTCTCTAATAAAAATGTACTCAAAGTGTGGTGTTTTGGATTATAG CGTCAAGTTGTTTGATGGTATGGAGGCTAGGAATGTGATCGCATGGACAGCCATGATTGACTCATATGTAGAAAACGGGTGCATAAATGAAGCATTCAAT GTGTTTAGGTTTATGCAGTGGTCGAAGCATAGGCCAGACTCTGTTACAATGGCAAGGATGTTGAGTATTTGCAGTAAAATTAAAACTTTGAAGTTTGGAA AAGAGATTCATGGACATATCTTGAAGAAAGATTTTGAGTCCATTCCTTTTGTTTCATCTGAGCTTGTCAAGATGTATGGGAGTTGTGGACTGGTTCATAG TGCTGAATCAGTGTTCAATGCAGTTCCTGTCAAGGGTTCAATGACATGGACGGCCATCATAGAGGCTTATGGATATAATAGCCTGTGGCAAGATGCAATC AAACTTTTTGATGAGATGAGATCCAGGAAGTTTACTCCTAATGATTTCACTTTCAAAGTGGTTCTATCAATCTGTGATGAAGCCGGATTCGCAGATGATG CTTGCAGAATCTTTGAACTAATGTCTAAGAGATATAAAGTTAAGATATCTGGAGAACACTACGCTATCATCATTGGACTTCTCAACCGTTCTGGTCGCAC TAGGGCAGCTCAAAGGTTTATCGATATGAGTAATTTATTATCGTGA
AA sequence Show only first row Show all	>Potri.019G075400.1 pacid=42774667 polypeptide=Potri.019G075400.1.p locus=Potri.019G075400 ID=Potri.019G075400.1.v4.1 annot-version=v4.1 MEAMQSPSLSVHLHCFPQNPLNINITHRQFSKIKSSTQTQPVQTQNPNKKHQQFDERDAFPASLPLHKKNPQAIYKDIQRFSRKNQLKDALIIMDYMDQQ GIPVNPTTFSALIAACIRSKSLTKAKEIHTHLRINGLQNNEFLRTKLVHMYTSCGSIEDAKSVFDECTSTATVYPWNALIRGTVISGKKRYGDVLSAYQE MRVNGVELNEYTFSNVIKSFAGASALKQGFKTHAIMIKNGMISSAVLRTCLIDMYFKCGKTRLAHNVFEELLERDIVAWGAMIAGFAHNRRQWEALDYVR WMVSEGMYPNSVIITSILPVIGEVWARRLGQEVHCYVLKMKGYSRELSIQSGLIDMYCKCGDMGSGRRVFYGSRERNVVSWTALMSGYVSNGRLEQALRS VVWMQQEGCRPDVVTVATVIPVCAKLKTLKHGKEIHAFSVKKLFLPNVSLTTSLIKMYSKCGVLDYSVKLFDGMEARNVIAWTAMIDSYVENGCINEAFN VFRFMQWSKHRPDSVTMARMLSICSKIKTLKFGKEIHGHILKKDFESIPFVSSELVKMYGSCGLVHSAESVFNAVPVKGSMTWTAIIEAYGYNSLWQDAI KLFDEMRSRKFTPNDFTFKVVLSICDEAGFADDACRIFELMSKRYKVKISGEHYAIIIGLLNRSGRTRAAQRFIDMSNLLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71460			Pentatricopeptide repeat (PPR-...		Potri.019G075400 [exp]	0	1
AT2G02980		OTP85	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.010G168800 [exp]	1.00	0.9875
AT3G22690			unknown protein		Potri.013G044700 [exp]	2.82	0.9812
AT5G50110			S-adenosyl-L-methionine-depend...		Potri.012G076100 [exp]	3.00	0.9739
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Potri.017G142500 [exp]	3.87	0.9799
AT2G04030		Hsp88.1, AtHsp9...	HEAT SHOCK PROTEIN 88.1, EMBRY...		Potri.010G136800 [exp]	3.87	0.9766
AT2G45350		CRR4	CHLORORESPIRATORY REDUCTION 4,...		Potri.014G068800 [exp]	4.35	0.9614
AT4G25270		OTP70	organelle transcript processin...		Potri.015G128800 [exp]	4.47	0.9723
AT4G37380			Tetratricopeptide repeat (TPR)...		Potri.007G050200 [exp]	4.58	0.9752
AT5G62990		EMB1692	embryo defective 1692, Ubiquit...		Potri.002G233900 [exp]	4.89	0.9793
AT1G06190			Rho termination factor (.1.2)		Potri.002G037800 [exp]	5.65	0.9751

Compare expression of checked genes

Potri.019G075400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.