Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05670 89 / 2e-18 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT2G15630 83 / 1e-16 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G52620 78 / 5e-15 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G53330 76 / 2e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G12100 75 / 4e-14 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G62670 75 / 5e-14 RPF2 rna processing factor 2 (.1) AT5G57250 75 / 7e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 73 / 1e-13 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16420 73 / 2e-13 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G19440 73 / 3e-13 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G147700 [exp] 89 / 2e-18 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G139200 [exp] 86 / 2e-17 AT1G52620 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G204100 [exp] 81 / 6e-16 AT1G07740 502 / 2e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G257300 [exp] 81 / 7e-16 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050240 [exp] 80 / 1e-15 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.019G021200 [exp] 80 / 1e-15 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034200 [exp] 79 / 2e-15 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034400 [exp] 79 / 2e-15 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G264800 [exp] 79 / 3e-15 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002951 [exp] 226 / 3e-68 AT5G61990 80 / 7e-16 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003515 [exp] 207 / 3e-61 AT3G62470 80 / 6e-16 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000015 [exp] 110 / 6e-28 AT3G09060 67 / 3e-13 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003461 [exp] 93 / 1e-19 AT3G62470 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015741 [exp] 83 / 1e-16 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012037 [exp] 83 / 1e-16 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008969 [exp] 78 / 8e-15 AT5G04810 1121 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10012068 [exp] 78 / 9e-15 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 77 / 9e-15 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013832 [exp] 78 / 1e-14 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Potri.019G075900.17 pacid=42773521 polypeptide=Potri.019G075900.17.p locus=Potri.019G075900 ID=Potri.019G075900.17.v4.1 annot-version=v4.1 ATGGAGATCTCAAAGCTCTCCCACAAGAATCTCAGGTACCTCTCAAACCCTTATTATAATTTGATTTTCCCTCTCCTCTCCCAACAGTCCCAGCCACAAC TCTTTCCAAACCCATCATACCCATCTTCAACTTCTCTATGTTTCTGTAACTATCCTAGTTTATCCTTGTTTTCCTCAAATGGGTCACCTTCTGTCTCAAA ATTCATGGGTTTTACTGGATGTAATGGTAGGTACAATGGTCATAATAGTCAAAGTTTGAATCTTTATTTCTTCAAGTCAAGTATTCATGGTTATCTTCGA GGTTACAAGACATCATCCTTTGATGTTTATAAGGAAATGGGAACTGGTAGGGTCAGACCAAAGGCAATGCAAAAACAAGTAGCATATATTATTGATTTGA TTAAGAGGGATGAGTATGATTTGGAGTACAAGTTGGGTTCTTTGAGTGTAAAGCTATCTATTGCTTCTGTGACTCTGGTTTTTCATGTCTTGAATAGTGA AAAGGTGTCTGCTTTGCGTTTCTTTCGTTGGATTAGACATTGGCAGCCTGAATTGAGATGTAATTCTGATATTTGTAGCTTGGTTATTGATAATTGTGGG CGTTTAGATGATTATGATGCTATGAGGAGTCTTTTGAATGAGTTTAACGAGAACCAGTTATGTCTAACCAAAAAGGCATTCGAGTTCTTACATGTTATGA ATGTTACAAATGAGTCCTTGGTGGAATCCACACAGAGAGTGATTGTCTTGTTGCTTGAAGTTAGAGGGTCATGTTATGGTTGGGTTTCCTCATTGATCGA AATGTTCAGTGTTTTGGGATCCTTTGACATGGTTGAGTTTGTGATGAAGAAAACTGAGAGGAAGATTTCTTATTACTATATTTTTATCAGGGAAATGTGT CGGAGATGTGATTTTAAAGGGGTGAGAGATATTCAGGATGAGATGAGGAAAGAGGGCTTTGAACTGAATGCCCGAATTTACAATTATCTAATTAGCTGTT TGCTTAAGAACGGTGAATATGCTGATGCTTGCAAGGTATTGACGGAAATGCAGGACAAGGACTGCCCTCCTGATGCATTAACCTTTGAAATTTTTATATA TTACTGTTGCAATAACGGCAAGACTGAAATTGCATGTCACTATTTTGATGAGATTGTGGCAAGGGGTCTTGAACCTCGGCTTTCAACACATGCTGCCTTT ATCAAGGGTTTTTTCAACTCAGAGCAATATGAGGAGGCATATAAGTACGTGGTTGATTCAGATAAGAAGTACAAGTGCACAAGCTGCATGAATTACAGCT TGCTTGCGAGGCTTCATCAGAAAAGAGGAAATCTGGTGATTGCCCAAAATATTCTTTCTGAAATGATCAAGAAAGGTCTTAGACCATATTTTAAAGTGTA TATGAAGGTTTTCAACTGCCTCAATAAATCCGGCAGGGAAACGCTAGCCACAGATTTGCAAGAGCAGTTTCATCAGCTTCATTCAAAGGCTTAG
AA sequence Show only first row Show all	>Potri.019G075900.17 pacid=42773521 polypeptide=Potri.019G075900.17.p locus=Potri.019G075900 ID=Potri.019G075900.17.v4.1 annot-version=v4.1 MEISKLSHKNLRYLSNPYYNLIFPLLSQQSQPQLFPNPSYPSSTSLCFCNYPSLSLFSSNGSPSVSKFMGFTGCNGRYNGHNSQSLNLYFFKSSIHGYLR GYKTSSFDVYKEMGTGRVRPKAMQKQVAYIIDLIKRDEYDLEYKLGSLSVKLSIASVTLVFHVLNSEKVSALRFFRWIRHWQPELRCNSDICSLVIDNCG RLDDYDAMRSLLNEFNENQLCLTKKAFEFLHVMNVTNESLVESTQRVIVLLLEVRGSCYGWVSSLIEMFSVLGSFDMVEFVMKKTERKISYYYIFIREMC RRCDFKGVRDIQDEMRKEGFELNARIYNYLISCLLKNGEYADACKVLTEMQDKDCPPDALTFEIFIYYCCNNGKTEIACHYFDEIVARGLEPRLSTHAAF IKGFFNSEQYEEAYKYVVDSDKKYKCTSCMNYSLLARLHQKRGNLVIAQNILSEMIKKGLRPYFKVYMKVFNCLNKSGRETLATDLQEQFHQLHSKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05670			Pentatricopeptide repeat (PPR-...		Potri.019G075900 [exp]	0	1
AT4G20310			Peptidase M50 family protein (...		Potri.003G157800 [exp]	1.00	0.8676
AT1G78100		AUF1	auxin up-regulated f-box prote...		Potri.001G021500 [exp]	1.41	0.8616
AT1G43245			SET domain-containing protein ...		Potri.005G193500 [exp]	3.31	0.8119	SDG954
AT4G17610			tRNA/rRNA methyltransferase (S...		Potri.001G150900 [exp]	5.29	0.8367
AT2G40650			PRP38 family protein (.1)		Potri.005G021600 [exp]	5.91	0.8253
AT5G40820		ATATR, ATRAD3, ...	ARABIDOPSIS THALIANA ATAXIA TE...		Potri.004G179000 [exp]	6.00	0.8603
AT3G57570			ARM repeat superfamily protein...		Potri.006G054100 [exp]	6.48	0.8106
AT1G53040			Protein of unknown function (D...		Potri.011G119300 [exp]	8.66	0.8099
AT1G79730		ELF7	EARLY FLOWERING 7, hydroxyprol...		Potri.003G048900 [exp]	9.48	0.8329
AT3G42670		CLSY1, CLSY, CH...	CLASSY 1, CLASSY1, chromatin r...		Potri.010G183832 [exp]	10.39	0.8209

Compare expression of checked genes

Potri.019G075900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.