Plant FIBer expression Database

Potri.019G076200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G100700
[exp]
138 / 1e-36 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018952
[exp]
522 / 0 ND /
Lus10011266
[exp]
436 / 3e-152 ND /
Lus10018943
[exp]
220 / 3e-65 AT1G76990 686 / 0.0 ACT domain repeat 3 (.1.2.3.4.5)
Lus10036475
[exp]
129 / 1e-33 ND /
Lus10010342
[exp]
129 / 3e-33 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01702 TGT Queuine tRNA-ribosyltransferase
Representative CDS sequence
>Potri.019G076200.1 pacid=42773738 polypeptide=Potri.019G076200.1.p locus=Potri.019G076200 ID=Potri.019G076200.1.v4.1 annot-version=v4.1
ATGAAGTTCTCAGTGAAAGCATGGAGCACGAGCAAGGGCAATTCCGCTGCAAGGACTGGTGTATTTCAGCTGGGCAACTGCCCTCAAATAGAAACACCTG
CTCTCCTCCTTTCTACACGTAAAGGGTTACCCCATTTTATTTCGCCTGACCTCCTCCCTTCTCTTCCTATCCCTGATTCTTCTCTCCTTCATGTTAGCCC
TCTTCACTTCATGGAAGGAATTTCATCAAAAACAATATCCTCAATTGGAGGACTCCATAAAATGATTGGATTGCATGATTTTGGACTTGCTGCTGTAGCA
AGGGATTCCATTCAATGCCTTCCAGAAAGTAGTGCCACAAATAAACTTGGTGCATCTTTTGAAACTCCTTGTGGTCGCCTTTTGATTAAACCTGCAGAAT
ACATGGGAATAATTTCTTCTTTGAGGCCAAATCTTTGGGCCACTTTGGCTGATGAAGTACCTGCATGGGTATCAAAGAAGAGGAACAAGAATTCAGTTGA
TCGAACTGTAAAGTGGCTTGATGAATGCGTTGCACTAAGCCCGGCAAGTGGAGTTGCTTTTGGAGCCATTGTTGGAGGGTCTGATGTCGAAGAACGGAGG
CGATGTGCACAAGAAGTAGTGAAGCGCAATGTATCAGGTTATTGGATTGGAGGATTTGGATTTGGAGAGAGCACTGATGAGCGCCCTGCTTTGCTTAGTG
CTGTAACTGATATTTTACCAAAGGATGGGCCACGTCTGATCAGTGGACTAGGACTACCAGAGGAGGTGTTGCAGGGTGTTGCTGCTGGCATTGATCTTTT
TGACTCATCGTATATTTATCATCTAACTATTGGAGGCTTTGCACTTACCTTTCCACTGGATAACAAAACATATGCCTCTGATTTGAAGTTGACTGGTATG
GGAATTGACCAGACAAAGATTAATCTGAAAGCAACTGTTTACAGGAAAGATGCGACGCCAATTGTTGAAAGTTGCAGCTGCTATACTTGTCAGAATCATA
CTAAAGCTTACATCAATCATTTACTCAATGTTCATGAAATGTTGGCCCAGATTCTTCTAGAAATACATAATACACACCACTATCTGGGGTTCTTCCGGTC
AATAAGAGAAGCAATAAAGGAAGGCAGATTTGAGCAATTTCGGGAGATGTTTGTTGAGAAAAGGCGTATTCATCTTGCTGAAGTTGCTGTATGTGCATGA
AA sequence
>Potri.019G076200.1 pacid=42773738 polypeptide=Potri.019G076200.1.p locus=Potri.019G076200 ID=Potri.019G076200.1.v4.1 annot-version=v4.1
MKFSVKAWSTSKGNSAARTGVFQLGNCPQIETPALLLSTRKGLPHFISPDLLPSLPIPDSSLLHVSPLHFMEGISSKTISSIGGLHKMIGLHDFGLAAVA
RDSIQCLPESSATNKLGASFETPCGRLLIKPAEYMGIISSLRPNLWATLADEVPAWVSKKRNKNSVDRTVKWLDECVALSPASGVAFGAIVGGSDVEERR
RCAQEVVKRNVSGYWIGGFGFGESTDERPALLSAVTDILPKDGPRLISGLGLPEEVLQGVAAGIDLFDSSYIYHLTIGGFALTFPLDNKTYASDLKLTGM
GIDQTKINLKATVYRKDATPIVESCSCYTCQNHTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIREAIKEGRFEQFREMFVEKRRIHLAEVAVCA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.019G076200
[exp]
0 1
AT5G07900 Mitochondrial transcription te... Potri.001G034966
[exp]
7.48 0.7243
AT1G16610 RNPS1, SR45 arginine/serine-rich 45 (.1.2.... Potri.011G143100
[exp]
9.48 0.7162 SR45.1
AT4G26900 HISN4, HISHF, A... HIS HF (.1) Potri.001G267400
[exp]
9.79 0.7392 HF.1
AT4G31120 PRMT5, SKB1 ,AT... PROTEIN ARGININE METHYLTRANSFE... Potri.018G000500
[exp]
12.48 0.7267
AT5G36950 DEGP10 DegP protease 10 (.1) Potri.008G079900
[exp]
14.14 0.7232
AT2G37690 phosphoribosylaminoimidazole c... Potri.019G012300
[exp]
18.33 0.7217 Pt-PURE.2
AT1G04870 PRMT10, ATPRMT1... protein arginine methyltransfe... Potri.018G071200
[exp]
19.77 0.6921
AT3G57000 nucleolar essential protein-re... Potri.006G040600
[exp]
25.47 0.7112
AT3G07750 3'-5'-exoribonuclease family p... Potri.014G166200
[exp]
28.14 0.6921
AT4G39300 unknown protein Potri.004G154800
[exp]
28.98 0.7129

Potri.019G076200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.