Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09610 367 / 2e-128 Protein of unknown function (DUF579) (.1) AT1G33800 367 / 2e-128 Protein of unknown function (DUF579) (.1) AT4G09990 361 / 4e-126 Protein of unknown function (DUF579) (.1) AT1G71690 325 / 1e-111 Protein of unknown function (DUF579) (.1) AT1G27930 228 / 2e-73 Protein of unknown function (DUF579) (.1) AT1G67330 227 / 2e-73 Protein of unknown function (DUF579) (.1) AT3G50220 173 / 6e-52 IRX15 IRREGULAR XYLEM 15, Protein of unknown function (DUF579) (.1) AT5G67210 169 / 1e-50 IRX15-L IRX15-LIKE, Protein of unknown function (DUF579) (.1) AT2G15440 162 / 9e-48 Protein of unknown function (DUF579) (.1) AT4G24910 116 / 2e-30 Protein of unknown function (DUF579) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G102200 [exp] 484 / 3e-174 AT1G33800 362 / 3e-126 Protein of unknown function (DUF579) (.1) Potri.004G226800 [exp] 370 / 2e-129 AT1G09610 424 / 4e-151 Protein of unknown function (DUF579) (.1) Potri.003G003801 [exp] 367 / 1e-128 AT1G09610 429 / 5e-153 Protein of unknown function (DUF579) (.1) Potri.003G172300 [exp] 229 / 3e-74 AT1G67330 369 / 1e-129 Protein of unknown function (DUF579) (.1) Potri.001G056300 [exp] 227 / 2e-73 AT1G67330 366 / 4e-128 Protein of unknown function (DUF579) (.1) Potri.009G098800 [exp] 174 / 3e-52 AT5G67210 293 / 2e-98 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.007G047000 [exp] 170 / 7e-51 AT5G67210 399 / 2e-140 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.001G302600 [exp] 169 / 2e-50 AT5G67210 305 / 2e-103 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.005G141300 [exp] 163 / 4e-48 AT5G67210 405 / 1e-142 IRX15-LIKE, Protein of unknown function (DUF579) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005829 [exp] 395 / 4e-139 AT4G09990 360 / 8e-126 Protein of unknown function (DUF579) (.1) Lus10005822 [exp] 394 / 1e-138 AT4G09990 360 / 6e-126 Protein of unknown function (DUF579) (.1) Lus10002954 [exp] 305 / 3e-104 AT4G09990 298 / 1e-101 Protein of unknown function (DUF579) (.1) Lus10037026 [exp] 231 / 7e-75 AT1G67330 382 / 1e-134 Protein of unknown function (DUF579) (.1) Lus10015780 [exp] 231 / 9e-75 AT1G67330 381 / 4e-134 Protein of unknown function (DUF579) (.1) Lus10006415 [exp] 229 / 8e-74 AT1G67330 368 / 1e-128 Protein of unknown function (DUF579) (.1) Lus10011360 [exp] 228 / 1e-73 AT1G67330 350 / 1e-121 Protein of unknown function (DUF579) (.1) Lus10012537 [exp] 215 / 1e-68 AT1G27930 313 / 2e-107 Protein of unknown function (DUF579) (.1) Lus10027879 [exp] 166 / 2e-49 AT5G67210 299 / 2e-101 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Lus10002829 [exp] 164 / 9e-49 AT5G67210 296 / 5e-100 IRX15-LIKE, Protein of unknown function (DUF579) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04669 [poplar] [flax] Polysacc_synt_4 Polysaccharide biosynthesis
Representative CDS sequence Show only first row Show all	>Potri.019G076300.1 pacid=42773547 polypeptide=Potri.019G076300.1.p locus=Potri.019G076300 ID=Potri.019G076300.1.v4.1 annot-version=v4.1 ATGAGGTCCAAAAACCAATCGCCCATTAACATCAAGATCATCATCCTCGGTTTATTCTTTCTCCTCTTCCTTTTGGTGATTGCTTGGTCAAGTTACTCGT CTCCCAGACCAAATTCATCCCCCAAAGCAGAAAATGATGATCTATCAGATTCATCAAATCTGTCCACTGATGAAGAAGAACCAAAACCATCAACAGCAGC CTGTCCTTCTCTTCCATTGACGCCGACATGCACCAAGATCCCACCTTCTTTAGCCAACGCTCTTGTCCATTATGTGACAACAAACATCACCCCACAACAA ACCCTCAAGGAAATCTCAGTCTCATTAAGGGTCCTCGAAAAAAAGTCACCTTGCAACTTCCTAGTCTTTGGCCTTGGCCATGACAGTCTAATGTGGACAT CTCTAAATCACGGCGGCCGCACTGTTTTCCTGGAAGAGGACAAGGCCTGGATTGAGCAGATCAGAGAGAAACTGCCCACCTTGGAGTCCTATCATGTGAC ATACGACACCAGAGTTCATCAGGCAGATGGGCTCATGGAGACAGGAATGGGAGATGAATGCAAAGTAGTCGGTGATCCAAGATTCTCCAAGTGTCAGCTT GCCCTTAAAGGGTTCCCTGGTGATATCTATGATGTGGAATGGGACTTGATCATGGTGGATGCACCTACTGGGTACCATGATGAGGCTCCAGGGAGAATGA ATGCAATCTACACAGCTGGATTGATGGCTAGAAACAGAGAAAATGGAGTGACTGATGTGTTTGTGCATGATGTTGATAGAGTTGTGGAGGATAAATTCTC CAAGGCTTTTCTTTGTGAAGGATACTTGACTGAGCAAGAAGGGAGGTTAAGGCACTTCATTATTCCTACTCATAGAACTAGTTCGGGAAAACCTTTTTGT CCATAG
AA sequence Show only first row Show all	>Potri.019G076300.1 pacid=42773547 polypeptide=Potri.019G076300.1.p locus=Potri.019G076300 ID=Potri.019G076300.1.v4.1 annot-version=v4.1 MRSKNQSPINIKIIILGLFFLLFLLVIAWSSYSSPRPNSSPKAENDDLSDSSNLSTDEEEPKPSTAACPSLPLTPTCTKIPPSLANALVHYVTTNITPQQ TLKEISVSLRVLEKKSPCNFLVFGLGHDSLMWTSLNHGGRTVFLEEDKAWIEQIREKLPTLESYHVTYDTRVHQADGLMETGMGDECKVVGDPRFSKCQL ALKGFPGDIYDVEWDLIMVDAPTGYHDEAPGRMNAIYTAGLMARNRENGVTDVFVHDVDRVVEDKFSKAFLCEGYLTEQEGRLRHFIIPTHRTSSGKPFC P

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09610			Protein of unknown function (D...		Potri.019G076300 [exp]	0	1
AT1G19190			alpha/beta-Hydrolases superfam...		Potri.004G142800 [exp]	1.41	0.8664
AT1G69420			DHHC-type zinc finger family p...		Potri.010G163200 [exp]	1.73	0.8445
AT1G19170			Pectin lyase-like superfamily ...		Potri.018G062700 [exp]	1.73	0.8692
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Potri.013G061800 [exp]	2.82	0.8416	Pt-CIMS.2
AT4G24015			RING/U-box superfamily protein...		Potri.003G142600 [exp]	5.19	0.8066
AT1G68795		CLE12	CLAVATA3/ESR-RELATED 12 (.1)		Potri.010G130400 [exp]	8.77	0.8025	CLE12.1
AT5G11730			Core-2/I-branching beta-1,6-N-...		Potri.018G059100 [exp]	9.16	0.7990
AT2G20650			RING/U-box superfamily protein...		Potri.007G139300 [exp]	9.21	0.8276
AT4G10550			Subtilase family protein (.1.2...		Potri.011G146300 [exp]	9.48	0.8062
AT1G02040	C2H2ZnF		C2H2-type zinc finger family p...		Potri.014G066200 [exp]	10.58	0.8201

Compare expression of checked genes

Potri.019G076300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.