Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71691 477 / 3e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G29670 330 / 2e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45670 310 / 1e-103 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 305 / 1e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G33811 305 / 1e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71250 305 / 2e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 305 / 2e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G08460 299 / 3e-99 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 287 / 9e-95 GLIP7 GDSL-motif lipase 7 (.1) AT2G19060 233 / 8e-74 SGNH hydrolase-type esterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G102500 [exp] 687 / 0 AT1G71691 481 / 2e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.011G076500 [exp] 333 / 5e-113 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G064500 [exp] 329 / 4e-111 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G067600 [exp] 307 / 2e-102 AT1G71250 473 / 9e-168 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G102400 [exp] 288 / 7e-95 AT1G33811 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076400 [exp] 265 / 6e-86 AT5G45670 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.018G008100 [exp] 263 / 3e-85 AT1G29670 345 / 8e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.003G213700 [exp] 252 / 4e-81 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G005402 [exp] 244 / 4e-78 AT1G29670 341 / 3e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016929 [exp] 514 / 0 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10001540 [exp] 425 / 4e-150 AT1G71691 393 / 2e-137 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Lus10002775 [exp] 330 / 2e-111 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011998 [exp] 328 / 6e-111 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011997 [exp] 326 / 8e-110 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002777 [exp] 318 / 2e-106 AT5G45670 548 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041847 [exp] 301 / 4e-100 AT1G29670 459 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10039152 [exp] 299 / 3e-99 AT1G71250 508 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011996 [exp] 295 / 1e-97 AT1G29670 451 / 3e-159 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10000893 [exp] 284 / 2e-93 AT1G33811 504 / 3e-180 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.019G076600.1 pacid=42773784 polypeptide=Potri.019G076600.1.p locus=Potri.019G076600 ID=Potri.019G076600.1.v4.1 annot-version=v4.1 ATGGCTACCTTCAAGCTGCCTTGCATGCTGGTGATTTTCTTGGTGTTTGGTGCAGGTTTAGGCCAAAATGTGGATCCATTTGGGCCAGGAGTGGGAAGGA GAAGGGAGATGGTGCCTGCTATGTTTATATTTGGAGACTCGCTCATTGACAATGGCAATAACAATAACCTTCCTTCTTTTGCCAAGGCCAACTATTTCCC TTATGGTATTGACTTCAACGGTGGTCCTACTGGCCGTTTCTCCAATGGTTACACCATGGTTGACGAAATTGCTGAACAACTAGGACTTCCTCTGATTCCT GCATACTCTGAGGCATCAGGAGATCAAGTGCTTAATGGAGTCAACTATGCCTCTGCAGCGGCAGGAATCCTTGATATCACAGGCAGAAATTTTGTAGGTC GCATACCATTTGACCAACAGATAAGGAACTTCCAAAATACACTTGATCAGATTACAAATAATCTTGGAGCAGACGATGTGGCCAGGCAAGTTGGACGGAG CATCTTTTTTGTGGGGATGGGCAGTAATGACTACCTTAATAACTATCTCATGCCTAACTATCCAACTCGGAATCAATATAATGGCAGACAATATGCAGAT CTCTTGACTCAAGAATATAGTAGGCAACTCACTTCACTTTACAATCTTGGAGCACGGAAATTTGTTATTGCGGGATTAGGAGTCATGGGGTGTATCCCAA GTATCTTGGCCCAGAGCCCTGCAGGAATCTGCTCAGATTCAGTTAACCAGCTAGTTCAACCTTTCAATGAAAATGTGAAGGCTATGCTCAGTAACTTCAA TGCCAATCAGTTGCCAGGTGCAAAATCCATTTTTATTGATGTCGCTCGTATGTTTCGAGAGATCCTCACTAACTCCCCAGCCTATGGATTTAGCGTTATA AACCGTGGATGCTGTGGCATCGGGCGAAATAGAGGTCAAATTACATGTCTTCCGTTCCAAACACCCTGTCCTAACAGAGAACAGTATGTGTTTTGGGATG CATTCCACCCAACAGAAGCTGTGAATGTTTTGATGGGGAGAAAGGCCTTCAATGGGGATTTGAGCATGGTCTATCCTATGAACATAGAACAACTTGCCAA TCTTGATATTGAGTCCAATTAA
AA sequence Show only first row Show all	>Potri.019G076600.1 pacid=42773784 polypeptide=Potri.019G076600.1.p locus=Potri.019G076600 ID=Potri.019G076600.1.v4.1 annot-version=v4.1 MATFKLPCMLVIFLVFGAGLGQNVDPFGPGVGRRREMVPAMFIFGDSLIDNGNNNNLPSFAKANYFPYGIDFNGGPTGRFSNGYTMVDEIAEQLGLPLIP AYSEASGDQVLNGVNYASAAAGILDITGRNFVGRIPFDQQIRNFQNTLDQITNNLGADDVARQVGRSIFFVGMGSNDYLNNYLMPNYPTRNQYNGRQYAD LLTQEYSRQLTSLYNLGARKFVIAGLGVMGCIPSILAQSPAGICSDSVNQLVQPFNENVKAMLSNFNANQLPGAKSIFIDVARMFREILTNSPAYGFSVI NRGCCGIGRNRGQITCLPFQTPCPNREQYVFWDAFHPTEAVNVLMGRKAFNGDLSMVYPMNIEQLANLDIESN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Potri.019G076600 [exp]	0	1
AT5G48670	MADS	FEM111, AGL80	AGAMOUS-like 80 (.1)		Potri.013G018100 [exp]	5.09	0.7731
AT2G26330		QRP1, ER	QUANTITATIVE RESISTANCE TO PLE...		Potri.006G220100 [exp]	8.94	0.8649
AT5G12890			UDP-Glycosyltransferase superf...		Potri.017G077500 [exp]	11.22	0.8483
AT1G78170			unknown protein		Potri.002G096100 [exp]	11.48	0.8522
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Potri.002G157600 [exp]	15.00	0.7861
AT1G01630			Sec14p-like phosphatidylinosit...		Potri.017G063966 [exp]	19.89	0.8375
AT4G38040			Exostosin family protein (.1)		Potri.015G087900 [exp]	20.00	0.7476
					Potri.002G252400 [exp]	32.00	0.8187
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.018G051400 [exp]	32.72	0.8197
AT5G49650		XK2, XK-2	XYLULOSE KINASE 2, xylulose ki...		Potri.019G077600 [exp]	35.69	0.6802

Compare expression of checked genes

Potri.019G076600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.