Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	AGL12.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71692 237 / 9e-80 MADS XAL1, AGL12 XAANTAL1, AGAMOUS-like 12 (.1) AT1G24260 140 / 3e-41 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G03710 137 / 9e-41 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) AT1G69120 137 / 7e-40 MADS AGL7, AP1 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) AT3G58780 132 / 5e-38 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT5G15800 130 / 3e-37 MADS AGL2, SEP1 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) AT4G09960 128 / 6e-37 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT4G18960 129 / 7e-37 MADS AG AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) AT2G42830 128 / 1e-36 MADS AGL5, SHP2 SHATTERPROOF 2, AGAMOUS-like 5, K-box region and MADS-box transcription factor family protein (.1.2) AT3G02310 128 / 2e-36 MADS AGL4, SEP2 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G102600 [exp] 351 / 5e-125 AT1G71692 250 / 4e-85 XAANTAL1, AGAMOUS-like 12 (.1) Potri.003G169600 [exp] 152 / 8e-46 AT1G24260 359 / 7e-127 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.001G058400 [exp] 149 / 6e-45 AT1G24260 362 / 8e-128 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.004G115500 [exp] 138 / 2e-40 AT3G02310 357 / 4e-126 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Potri.017G099700 [exp] 137 / 4e-40 AT3G02310 372 / 8e-132 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Potri.004G064300 [exp] 136 / 9e-40 AT4G18960 313 / 8e-109 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.008G098400 [exp] 134 / 7e-39 AT5G15800 275 / 2e-93 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Potri.010G154100 [exp] 130 / 1e-37 AT1G69120 324 / 7e-113 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Potri.004G115400 [exp] 130 / 2e-37 AT5G60910 230 / 7e-76 FRUITFULL, AGAMOUS-like 8 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001277 [exp] 237 / 3e-80 AT1G71692 218 / 8e-73 XAANTAL1, AGAMOUS-like 12 (.1) Lus10009472 [exp] 212 / 2e-70 AT1G71692 204 / 3e-67 XAANTAL1, AGAMOUS-like 12 (.1) Lus10005080 [exp] 139 / 2e-40 AT3G02310 372 / 1e-131 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10007983 [exp] 137 / 5e-40 AT5G60910 298 / 3e-102 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10021140 [exp] 137 / 5e-40 AT5G60910 291 / 1e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Lus10003124 [exp] 136 / 1e-39 AT1G24260 355 / 6e-125 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10034663 [exp] 135 / 5e-39 AT5G15800 267 / 4e-90 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10015765 [exp] 134 / 7e-39 AT1G24260 347 / 5e-122 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10003125 [exp] 132 / 9e-39 AT1G24260 290 / 9e-101 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10037040 [exp] 133 / 2e-38 AT1G24260 350 / 7e-123 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain) PF01486 [poplar] [flax] K-box K-box region
Representative CDS sequence Show only first row Show all	>Potri.019G076800.1 pacid=42773756 polypeptide=Potri.019G076800.1.p locus=Potri.019G076800 ID=Potri.019G076800.1.v4.1 annot-version=v4.1 ATGGCTCGTGGAAAGGTTCAGTTGAGACGTATTGAGAACCATGTGCACAGGCAGGTTACCTTCTGCAAGCGCCGAGCAGGGCTCCTTAAGAAGGCTAAGG AGCTCTCTGTGCTGTGTGATGCTGAAATTGGAGTTGTCATTTTCTCCGCCCATGGAAAGCTCTATGAACTAGCCACCAAAGGAACCATGCAAGGGCTCAT TGAGAGGTACATGAAGTCCAGCCGTGGGGCTCAACCTGAACCAGCTGCCATGGAGACCCAGCCGGCGCCTGATCTGGATACAAAGGAGGAGATCAACATG TTGAAGCAAGAGATTGAAGTACTGCAAAAAGGACTAAGGTACATGTTCGGAGCAAGAGCTGCAGCAGAAATGAGCTTAGATGAATTGCTTGTACTCGAAA AACATCTTGAAATTTGGATTTATCAAATTCGTTCAACCAAGATGGACATCATGTTTAAAGAGATTCAGCAGTTGAGGAACAAGGAAGAAATATTGACGGC TGCAAACCAACACCTCCATAATAAGGTGGAGGAGAATGCTGAGATTACTAACTTTGTGTCAGTAACCTCTGATTTTCCGCACCCACTAACTATACAAAAT GAAATAATATTTCAATATTAG
AA sequence Show only first row Show all	>Potri.019G076800.1 pacid=42773756 polypeptide=Potri.019G076800.1.p locus=Potri.019G076800 ID=Potri.019G076800.1.v4.1 annot-version=v4.1 MARGKVQLRRIENHVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVVIFSAHGKLYELATKGTMQGLIERYMKSSRGAQPEPAAMETQPAPDLDTKEEINM LKQEIEVLQKGLRYMFGARAAAEMSLDELLVLEKHLEIWIYQIRSTKMDIMFKEIQQLRNKEEILTAANQHLHNKVEENAEITNFVSVTSDFPHPLTIQN EIIFQY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71692	MADS	XAL1, AGL12	XAANTAL1, AGAMOUS-like 12 (.1)		Potri.019G076800 [exp]	0	1	AGL12.1
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Potri.002G133200 [exp]	1.41	0.9242
AT2G18196			Heavy metal transport/detoxifi...		Potri.011G149500 [exp]	2.64	0.9303
AT1G32583			unknown protein		Potri.015G101000 [exp]	5.83	0.8520
AT5G04080			unknown protein		Potri.006G043300 [exp]	5.91	0.9100
					Potri.006G225400 [exp]	6.00	0.9170
AT1G69970		CLE26	CLAVATA3/ESR-RELATED 26 (.1.2)		Potri.010G039800 [exp]	11.66	0.8993
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Potri.013G115200 [exp]	12.24	0.8787	Pt-SUT1.2
AT1G29380			Carbohydrate-binding X8 domain...		Potri.011G078500 [exp]	13.85	0.9150
					Potri.012G075550 [exp]	15.16	0.8072
AT3G30340			nodulin MtN21 /EamA-like trans...		Potri.011G149000 [exp]	16.97	0.8715

Compare expression of checked genes

Potri.019G076800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.