Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09640 303 / 2e-99 Translation elongation factor EF1B, gamma chain (.1.2) AT1G57720 303 / 2e-99 Translation elongation factor EF1B, gamma chain (.1.2) AT2G30870 66 / 3e-12 ERD13, ATGSTF4, ATGSTF10 EARLY DEHYDRATION-INDUCED 13, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 10, glutathione S-transferase PHI 10 (.1) AT2G30860 58 / 2e-09 GLUTTR, ATGSTF7, ATGSTF9 glutathione S-transferase PHI 9 (.1.2) AT5G17220 56 / 5e-09 GST26, TT19, ATGSTF12 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) AT3G62760 55 / 2e-08 ATGSTF13 Glutathione S-transferase family protein (.1) AT1G02920 49 / 2e-06 ATGST11, GST11, ATGSTF8, ATGSTF7 ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 11, glutathione S-transferase 7 (.1) AT1G02930 47 / 5e-06 ATGST1, GST1, ERD11, ATGSTF3, ATGSTF6 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) AT3G03190 46 / 1e-05 ATGSTF6, ATGSTF11 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) AT1G49860 46 / 2e-05 ATGSTF14 glutathione S-transferase (class phi) 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G004700 [exp] 326 / 2e-108 AT1G57720 596 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2) Potri.004G226300 [exp] 325 / 4e-108 AT1G57720 323 / 3e-107 Translation elongation factor EF1B, gamma chain (.1.2) Potri.013G103100 [exp] 140 / 5e-41 AT1G09640 115 / 2e-32 Translation elongation factor EF1B, gamma chain (.1.2) Potri.002G207093 [exp] 63 / 4e-11 AT1G02930 263 / 5e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.017G138800 [exp] 59 / 7e-10 AT5G17220 265 / 1e-90 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) Potri.002G207479 [exp] 55 / 1e-08 AT1G02930 267 / 1e-91 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207286 [exp] 55 / 1e-08 AT1G02930 263 / 4e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G015100 [exp] 53 / 7e-08 AT3G03190 196 / 2e-63 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.002G015200 [exp] 53 / 8e-08 AT3G03190 208 / 4e-68 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002537 [exp] 609 / 0 AT1G09640 634 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2) Lus10002536 [exp] 606 / 0 AT1G09640 630 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2) Lus10007148 [exp] 325 / 4e-108 AT1G09640 638 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2) Lus10007150 [exp] 323 / 7e-107 AT1G09640 625 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2) Lus10033213 [exp] 310 / 2e-99 AT1G57720 600 / 0.0 Translation elongation factor EF1B, gamma chain (.1.2) Lus10020736 [exp] 55 / 2e-08 AT2G30860 308 / 6e-108 glutathione S-transferase PHI 9 (.1.2) Lus10029815 [exp] 54 / 3e-08 AT2G30860 332 / 2e-117 glutathione S-transferase PHI 9 (.1.2) Lus10040393 [exp] 54 / 6e-08 AT3G03190 263 / 1e-89 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Lus10020735 [exp] 52 / 2e-07 AT2G30860 334 / 4e-118 glutathione S-transferase PHI 9 (.1.2) Lus10030414 [exp] 50 / 6e-07 AT2G47730 267 / 1e-90 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0497 [poplar] [flax] GST_C PF00043 [poplar] [flax] GST_C Glutathione S-transferase, C-terminal domain CL0497 [poplar] [flax] PF00647 [poplar] [flax] EF1G Elongation factor 1 gamma, conserved domain CL0172 [poplar] [flax] Thioredoxin PF02798 [poplar] [flax] GST_N Glutathione S-transferase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.019G077000.3 pacid=42774657 polypeptide=Potri.019G077000.3.p locus=Potri.019G077000 ID=Potri.019G077000.3.v4.1 annot-version=v4.1 ATGGCTCTGGTATTACATGCGGGCAGCACAAACAAAAATGCTTTGAAGACACTCATTGCTGCTGAGTATAGTGGTGTCCAAGTTGAACTGGTCAAGAATT TTGAGATGGGTGTGTCAAATAAGACACCAGAGTTTCTTAAGATGAACCCCATTGGAAAGGTTCCTGTGTTGGAAACTCCAGATGGTCCCATATTTGAGAG TAATGCTATTGCACGCTATGTTACTCGCCTGAAGGCTGATAATCCCCTCTATGGCTCTTCATTGATCGAATATGCCCGCATTGAGCAATGGATTGATTTT GCAACATTGGAGATTGATGCCAATATTTTGCGCTGGTTCATACCAAGAATTGGTTTTGCTGTATACCTTCCTCCGGCTGAGGAAGCTGCAATTGCTGCAT TGAAGAGAGCACTCACAGCTTTGAACACCCATCTTTCCACCAGCACTTATCTGGTTGGACATTCTTTGACATTGGCTGATATCGTTTTGACCTGTAACCT GACTTTGGGATTTAGCCGTCTTTTGACAAAAACCTTCACTTCAGAATTTCCCCATGTTGAGAGATACTTCTGGACTATGGTTAATCAGCCGAATTTCCGC AAGATATTGGGTGAAGTGAAACAAACAGAATCTGTTCCTCCTGTGCAAAAGCCTTCACAACAAAAGGAACCTGCAAAACCTAAGGAACCTGCAATTCCTA AGGCGAAGGAGGAGCCAAAGAAGGAAACCAAGAAAGAATCAGCAAAGCCTAAAGCAGAAGAGGCTGGTGAAGCAGAAGAGGCGCCCAAGCCCAAGCCTAA GAATCCTCTTGATCTTTTGCCTCCTAGTAAGATGATCCTTGATGAATGGAAGAGGCTTTATTCTAACACAAAGACCAACTTCCGTGAGGTTGCAATTAAA GGATTTTGGGAAATGTATGATCCTGAGGGCTATTCCCTTTGGTTTTGTGATTACAAGTACAATGATGAGAATACAGTGTCATTTGTGACATTAAACAAGG TAGGTGGTTTCCTTCAGAGAATGGACTTGGCTCGTAAGTATGCTTTTGGGAAGATGCTGGTGATTGGCTCAGGACCACCATTCAAGGTGAAGGGGCTGTG GCTCTTCCGTGGACAAGAGATTCCCCAGTTTGTGATCGACGAGTGCTATGACATGGAGCTTTATGAGTGGAAGAAGGTTGACATCACAGATGAAGAACAG AAGGAGCGAGCCAGTCAGATGATTGAAGATTATGAGCCTTTTGAGGGGGAGCCTCTATTGGATGCCAAATGCTTCAAGTGA
AA sequence Show only first row Show all	>Potri.019G077000.3 pacid=42774657 polypeptide=Potri.019G077000.3.p locus=Potri.019G077000 ID=Potri.019G077000.3.v4.1 annot-version=v4.1 MALVLHAGSTNKNALKTLIAAEYSGVQVELVKNFEMGVSNKTPEFLKMNPIGKVPVLETPDGPIFESNAIARYVTRLKADNPLYGSSLIEYARIEQWIDF ATLEIDANILRWFIPRIGFAVYLPPAEEAAIAALKRALTALNTHLSTSTYLVGHSLTLADIVLTCNLTLGFSRLLTKTFTSEFPHVERYFWTMVNQPNFR KILGEVKQTESVPPVQKPSQQKEPAKPKEPAIPKAKEEPKKETKKESAKPKAEEAGEAEEAPKPKPKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIK GFWEMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSGPPFKVKGLWLFRGQEIPQFVIDECYDMELYEWKKVDITDEEQ KERASQMIEDYEPFEGEPLLDAKCFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G57720			Translation elongation factor ...		Potri.019G077000 [exp]	0	1
AT2G37270		ATRPS5B	ribosomal protein 5B (.1.2)		Potri.016G063200 [exp]	4.69	0.9428	Pt-RPS5.1
AT2G28105			unknown protein		Potri.004G215300 [exp]	4.79	0.9056
AT3G56340			Ribosomal protein S26e family ...		Potri.013G093700 [exp]	4.89	0.9277	RPS26.1
AT1G57860			Translation protein SH3-like f...		Potri.016G061100 [exp]	6.63	0.9424
AT2G46290			Transducin/WD40 repeat-like su...		Potri.008G141400 [exp]	7.93	0.9419	Pt-TRIP.2
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Potri.002G056200 [exp]	10.19	0.9357	Pt-RPS12.2
AT2G43360		BIOB, BIO2	BIOTIN AUXOTROPH B, BIOTIN AUX...		Potri.017G033300 [exp]	15.13	0.8480	Pt-BIO2.2
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Potri.005G072700 [exp]	15.49	0.9333
AT5G39850			Ribosomal protein S4 (.1)		Potri.016G076800 [exp]	20.24	0.8957
AT4G36130			Ribosomal protein L2 family (....		Potri.005G115700 [exp]	21.97	0.9273	RPL2.2

Compare expression of checked genes

Potri.019G077000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.