Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	AGL11.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09960 274 / 6e-94 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT4G18960 255 / 3e-86 MADS AG AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) AT2G42830 252 / 5e-85 MADS AGL5, SHP2 SHATTERPROOF 2, AGAMOUS-like 5, K-box region and MADS-box transcription factor family protein (.1.2) AT3G58780 249 / 4e-84 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G45660 155 / 2e-47 MADS ATSOC1, SOC1, AGL20 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) AT4G22950 155 / 2e-47 MADS AGL19 AGAMOUS-like 19 (.1) AT4G11880 152 / 2e-46 MADS AGL14 AGAMOUS-like 14 (.1) AT2G03710 151 / 3e-46 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G45650 151 / 1e-45 MADS AGL6 AGAMOUS-like 6 (.1) AT3G57230 151 / 1e-45 MADS AGL16 AGAMOUS-like 16 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G104900 [exp] 305 / 4e-106 AT4G09960 330 / 3e-116 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.004G064300 [exp] 255 / 2e-86 AT4G18960 313 / 8e-109 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.011G075800 [exp] 250 / 2e-84 AT4G18960 325 / 2e-113 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.001G112400 [exp] 163 / 2e-50 AT4G22950 253 / 6e-86 AGAMOUS-like 19 (.1) Potri.003G119700 [exp] 157 / 3e-48 AT4G11880 226 / 4e-75 AGAMOUS-like 14 (.1) Potri.002G151700 [exp] 157 / 6e-48 AT2G45660 212 / 8e-70 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Potri.009G079000 [exp] 155 / 3e-47 AT4G37940 293 / 3e-101 AGAMOUS-like 21 (.1) Potri.008G098400 [exp] 154 / 9e-47 AT5G15800 275 / 2e-93 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Potri.002G109601 [exp] 152 / 5e-46 AT3G57230 299 / 1e-103 AGAMOUS-like 16 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005302 [exp] 298 / 8e-103 AT4G09960 330 / 2e-115 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10008264 [exp] 297 / 3e-102 AT4G09960 328 / 3e-114 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10009481 [exp] 269 / 5e-91 AT4G09960 274 / 1e-92 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10034663 [exp] 154 / 4e-46 AT5G15800 267 / 4e-90 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10004638 [exp] 150 / 2e-45 AT3G02310 246 / 2e-82 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10026678 [exp] 149 / 8e-45 AT5G15800 225 / 3e-74 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10003125 [exp] 147 / 2e-44 AT1G24260 290 / 9e-101 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10005080 [exp] 147 / 1e-43 AT3G02310 372 / 1e-131 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10017871 [exp] 144 / 1e-43 AT1G69120 264 / 2e-90 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10003124 [exp] 147 / 2e-43 AT1G24260 355 / 6e-125 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain) PF01486 [poplar] [flax] K-box K-box region
Representative CDS sequence Show only first row Show all	>Potri.019G077200.5 pacid=42773070 polypeptide=Potri.019G077200.5.p locus=Potri.019G077200 ID=Potri.019G077200.5.v4.1 annot-version=v4.1 ATGGGAAGAGGAAAGATCGAGATCAAGAGGATCGAGAACACCACCAATCGTCAGGTTACTTTCTGCAAGAGGAGAAATGGGCTCTTGAAGAAAGCTTATG AATTATCAGTTCTATGTGATGCTGAAGTTGCTCTCATCGTCTTCTCTAGCCGTGGCCGTCTCTATGAGTACGCCAACAACAACAGCATAAGATCAACCAT AGATAGGTACAAAAAGGCCAGTTCAGATAGTTCAAATGCATCCTCTATCACAGAAATCAATGCCCAGTATTATCAACAAGAATCAGCAAAGCTGCGGCAA CAAATTCAAATGCTACAGAATTCTAACAGGCACTTAATGGGCGATGCTGTAAGTAATTTATCTGTGAAAGAGCTTAAGCAGCTGGAGAATAGGCTTGAGA GAGGCATTACTAGAATCAGGTCAAAGAAGCATGAGTTGCTGCTAGCTGAAATTGAGTACTTGCAGAAAAGGGAGATTGAGCTGGAAAATGAAAGTGTTTG TCTTAGGACCAAGATAGCAATTTCTTTGCTCCACATTTGCTTGAGGGTGGAACTGCATACCCACACAATGACAAGAAGATTCTCCATCTTGGGTAAAAAA AGAAATATTGGAGAACTGGTGTGCAAGTGGTATTTTGATATATATATGTAA
AA sequence Show only first row Show all	>Potri.019G077200.5 pacid=42773070 polypeptide=Potri.019G077200.5.p locus=Potri.019G077200 ID=Potri.019G077200.5.v4.1 annot-version=v4.1 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNNSIRSTIDRYKKASSDSSNASSITEINAQYYQQESAKLRQ QIQMLQNSNRHLMGDAVSNLSVKELKQLENRLERGITRIRSKKHELLLAEIEYLQKREIELENESVCLRTKIAISLLHICLRVELHTHTMTRRFSILGKK RNIGELVCKWYFDIYM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G09960	MADS	AGL11, STK	SEEDSTICK, AGAMOUS-like 11, K-...		Potri.019G077200 [exp]	0	1	AGL11.1
AT4G36790			Major facilitator superfamily ...		Potri.007G030800 [exp]	3.60	0.9333
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Potri.002G080700 [exp]	5.74	0.9217
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.019G120800 [exp]	6.00	0.9165	FLA14.5
AT5G15740		RRT1	O-fucosyltransferase family pr...		Potri.004G113500 [exp]	6.70	0.8863
					Potri.002G193400 [exp]	6.92	0.8978
AT3G42640		AHA8	H\(+\)-ATPase 8, H\(+\)-ATPase...		Potri.018G112400 [exp]	7.07	0.9154	Pt-AHA6.3
AT2G24060			Translation initiation factor ...		Potri.006G182000 [exp]	12.84	0.8382
					Potri.015G137350 [exp]	12.96	0.8463
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.019G121100 [exp]	13.41	0.8828
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Potri.001G373300 [exp]	15.00	0.8728

Compare expression of checked genes

Potri.019G077200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.