Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09900 547 / 0 ATMES12 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) AT1G33990 536 / 0 ATMES14 methyl esterase 14 (.1) AT1G26360 310 / 6e-103 ATMES13, SP1L1 ARABIDOPSIS THALIANA METHYL ESTERASE 13, methyl esterase 13 (.1) AT1G69240 301 / 1e-99 RHS9, ATMES15 ROOT HAIR SPECIFIC 9, ARABIDOPSIS THALIANA METHYL ESTERASE 15, methyl esterase 15 (.1) AT3G29770 299 / 2e-99 ATMES11 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) AT4G16690 174 / 2e-52 ATMES16 ARABIDOPSIS THALIANA METHYL ESTERASE 16, methyl esterase 16 (.1) AT3G10870 172 / 1e-51 ATMES17, MES17 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) AT2G23560 166 / 3e-49 ATMES7 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) AT5G58310 163 / 3e-48 ATMES18 ARABIDOPSIS THALIANA METHYL ESTERASE 18, methyl esterase 18 (.1) AT2G23610 162 / 6e-48 ATMES3 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G104700 [exp] 636 / 0 AT4G09900 541 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Potri.004G116500 [exp] 320 / 8e-108 AT3G29770 499 / 1e-177 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Potri.017G096900 [exp] 320 / 9e-108 AT3G29770 463 / 2e-163 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Potri.008G096900 [exp] 306 / 3e-102 AT1G26360 379 / 2e-129 ARABIDOPSIS THALIANA METHYL ESTERASE 13, methyl esterase 13 (.1) Potri.007G036800 [exp] 177 / 9e-53 AT2G23560 230 / 2e-74 ARABIDOPSIS THALIANA METHYL ESTERASE 7, methyl esterase 7 (.1) Potri.009G107500 [exp] 175 / 2e-52 AT3G50440 240 / 1e-78 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.007G036700 [exp] 169 / 1e-50 AT2G23610 244 / 8e-81 ARABIDOPSIS THALIANA METHYL ESTERASE 3, methyl esterase 3 (.1) Potri.009G107200 [exp] 168 / 6e-50 AT3G50440 244 / 4e-80 ARABIDOPSIS THALIANA METHYL ESTERASE 10, methyl esterase 10 (.1) Potri.019G131100 [exp] 165 / 6e-49 AT3G10870 323 / 9e-112 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005298 [exp] 552 / 0 AT4G09900 541 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Lus10003511 [exp] 520 / 0 AT4G09900 526 / 0.0 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Lus10009489 [exp] 384 / 9e-135 AT4G09900 378 / 2e-132 ARABIDOPSIS THALIANA METHYL ESTERASE 12, methyl esterase 12 (.1) Lus10030707 [exp] 309 / 3e-103 AT3G29770 494 / 4e-175 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Lus10013193 [exp] 307 / 3e-102 AT3G29770 493 / 8e-175 ARABIDOPSIS THALIANA METHYL ESTERASE 11, methyl esterase 11 (.1) Lus10037068 [exp] 294 / 2e-97 AT1G69240 365 / 5e-124 ROOT HAIR SPECIFIC 9, ARABIDOPSIS THALIANA METHYL ESTERASE 15, methyl esterase 15 (.1) Lus10036917 [exp] 289 / 6e-92 AT1G26370 650 / 0.0 RNA helicase family protein (.1) Lus10015532 [exp] 181 / 3e-55 AT2G23600 240 / 2e-79 ARABIDOPSIS THALIANA METHYL ESTERASE 2, ARABIDOPSIS METHYL ESTERASE 8, acetone-cyanohydrin lyase (.1) Lus10034253 [exp] 175 / 2e-52 AT3G10870 288 / 1e-97 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1) Lus10029011 [exp] 173 / 7e-52 AT3G10870 293 / 1e-99 ARABIDOPSIS THALIANA METHYL ESTERASE 17, methyl esterase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12697 [poplar] [flax] Abhydrolase_6 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.019G077400.3 pacid=42774745 polypeptide=Potri.019G077400.3.p locus=Potri.019G077400 ID=Potri.019G077400.3.v4.1 annot-version=v4.1 ATGGGTAATCATTTTACTTGCATGACAAAGAAGGACACTAGAGATAATCATGGATCAAGAAGCAAGAGAATGGGCAGGTCTCAGAGGAAGTTGTTGGCAG AGGAAGAGCTCTTGCATAGACAAGCTTTATCTATGGCACTACAACAGCACCAATTGTCTCAGAGATTTGATGGATCCATGTCCAGGAGGATTGGCTCCAC TAGCTCTAGAAGAAGAAATCTCTCTGATCCTTTCTCTAATGGAAAACAGGTGCCTGACTTTTTGGAGAATATAAACGTAAAGAAGTTTGTTCTGGTGCAT GGAGAAGGTTTTGGAGCATGGTGTTGGTACAAAACTATTGCTTTATTAGAGGAAGCAGGATTGTTTCCCATTGCCATAGATCTAACAGGATCAGGCATTG ATCTGGCAGATACATCCAGTGTCACAACATTGGCAGAATACTCAAAACCATTGATTAGTTATTTAGAAAACTTGCCTGAGGATGAGCAGGTTTTTTTGGT TGGCCATAGTAGTGGAGGTGCCTGCGTCTCTTATGCACTTGAGCATTTCCCCAAAAAGATCTCGAAAGCTATTTTTCTCTGTGCTACAATGGTGTCTGAT GGTCAGAGGCCTTTTGATGTGTTTGCTGAAGAGCTTGGATCTGCAGAACGTTTTATGCAAGAATCACAGTTTTTGATTTATGGAAATGGTAAAGACAAGC CTCCTACAGCATTCATGTTTGAGAAACAGCAAATGAAAGGTTTATATTTCAACCAATCACCAACAAAGGATGTTGCGTTGGCCATGGTTTCAATGAGACC TATTCCACTTGGTCCCATCATGGAGAAGCTATCATTGTCCCCTGAAAAATATGGAACTGGTCGGCGGTTCTTCATTCAGACACTGGATGATCGTGCTCTT TCACCAGATGTCCAAGAAAAGCTAGTGAGAGACAATCCACCAGAAAGAGTCTTCAAGATTAAAGGAAGTGATCACTGCCCATTCTTTTCAAAGCCTCAGT CCCTGCATAAAATGTTGCTGGAGATTGCTCAAATTCCATAG
AA sequence Show only first row Show all	>Potri.019G077400.3 pacid=42774745 polypeptide=Potri.019G077400.3.p locus=Potri.019G077400 ID=Potri.019G077400.3.v4.1 annot-version=v4.1 MGNHFTCMTKKDTRDNHGSRSKRMGRSQRKLLAEEELLHRQALSMALQQHQLSQRFDGSMSRRIGSTSSRRRNLSDPFSNGKQVPDFLENINVKKFVLVH GEGFGAWCWYKTIALLEEAGLFPIAIDLTGSGIDLADTSSVTTLAEYSKPLISYLENLPEDEQVFLVGHSSGGACVSYALEHFPKKISKAIFLCATMVSD GQRPFDVFAEELGSAERFMQESQFLIYGNGKDKPPTAFMFEKQQMKGLYFNQSPTKDVALAMVSMRPIPLGPIMEKLSLSPEKYGTGRRFFIQTLDDRAL SPDVQEKLVRDNPPERVFKIKGSDHCPFFSKPQSLHKMLLEIAQIP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Potri.019G077400 [exp]	0	1
AT1G50440			RING/FYVE/PHD zinc finger supe...		Potri.010G252900 [exp]	5.29	0.5462
AT1G06060			LisH and RanBPM domains contai...		Potri.002G029700 [exp]	19.05	0.5092
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Potri.013G010900 [exp]	27.27	0.4790	ALPHA.11
AT3G42170			BED zinc finger ;hAT family di...		Potri.011G104000 [exp]	32.49	0.5208
AT3G44510			alpha/beta-Hydrolases superfam...		Potri.009G164600 [exp]	40.69	0.4644
AT1G31910			GHMP kinase family protein (.1...		Potri.003G098100 [exp]	51.53	0.4944
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Potri.009G165700 [exp]	65.72	0.4856
AT1G55265			Protein of unknown function, D...		Potri.001G008240 [exp]	73.13	0.4800
AT4G31410			Protein of unknown function (D...		Potri.006G275400 [exp]	88.99	0.4714
AT4G18950			Integrin-linked protein kinase...		Potri.004G064400 [exp]	89.19	0.4599

Compare expression of checked genes

Potri.019G077400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.