Plant FIBer expression Database

Potri.019G077600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G49650 885 / 0 XK2, XK-2 XYLULOSE KINASE 2, xylulose kinase-2 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028235
[exp]
927 / 0 AT5G49650 835 / 0.0 XYLULOSE KINASE 2, xylulose kinase-2 (.1.2)
Lus10007234
[exp]
790 / 0 AT5G49650 712 / 0.0 XYLULOSE KINASE 2, xylulose kinase-2 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0108 Actin_ATPase PF00370 FGGY_N FGGY family of carbohydrate kinases, N-terminal domain
CL0108 Actin_ATPase PF02782 FGGY_C FGGY family of carbohydrate kinases, C-terminal domain
Representative CDS sequence
>Potri.019G077600.3 pacid=42773777 polypeptide=Potri.019G077600.3.p locus=Potri.019G077600 ID=Potri.019G077600.3.v4.1 annot-version=v4.1
ATGGCGCTTCCTCATGGCTCTCTTTTTCTTGGATTTGACAGCTCCACCCAGTCATTGAAAGCAACTGTCTTAGATTCCAATCTCAATATTGTCAAATCAG
AGCAAATTCATTTTGATTCTGATTTGCCCCACTACAAAACCAAAGATGGGGTCTATAGAGACCCTTCTGACAATGGCAGGATTGTTTCACCCACCTTGTT
GTGGGTAGAAGCTCTTGAACTTGTTCTTCAAAGGCTTGTGAAATCAGGTTTGGATTTTGGGAAAGTTGCTGCTGTTTCTGGTAGTGGACAGCAACATGGT
AGTGTTTATTGGAAGAAAGGTGGTTCTGGAATATTATCATCACTGGACTCCAAGAAACCATTGGTGGATCAATTAGGTGATGCCTTTTCCATCAAGGAAT
CGCCGGTTTGGATGGACAGTAGCACGACTACACAATGTAGAGAGATAGAGAAAGCTGTTGGCAGTGCATTGGAGTTGTCTCAGATAACTGGGTCACGTGC
TTATGAAAGGTTCACTGGACCACAGATTAGGAAAATATATCAGACACAACCAGAGGCTTATAATAACACTGAGAGGATTTCCCTTGTTAGCTCATTTATG
GCTTCACTTTTAGTTGGGGCTTATGCTAGTATTGATCACACTGATGGTGCTGGCATGAACTTGATGGATATCAACCAGAGAGTATGGTCTAAAAAGGTTT
TAGAGGTTACCGCACCAGGTTTAGAGGAAAAACTTGGAAAGCTGGCCCCTGCCCATGCTGTTGCTGGCAATATTGCTTCCTATTTTGTGGAGAGATATAA
TTTTAATAAGAATTGTTTGGTTGTTCAATGGTCTGGAGACAATCCAAACAGTTTAGCAGGTTTAACTCTTAGCGTTCCGGGGGATCTGGCAATCAGTCTT
GGAACTAGTGATACTGTTTTTGGGATTGCAAGTGACCCCAAACCTGGATTAGAAGGGCATGTTTTCCCTAATCCTGTTGACACACAAGGTTACATGGTTA
TGTTATGCTACAAAAATGGATCTTTGACTCGAGAAGATGTGCGCAACCGTTGTGCTGAAAAATCTTGGGAAATCTTCAATAAGTATCTGGAGCAAACACC
AGCTCTTAATGGTGGGAAGATGGGTTTCTACTACAAGGACCATGAAATTCTCCCTCCCCTTCCAGTTGGCTTCCATCGCTATGTGCTCCCAAATTTCACG
GGCAACAACGTGGAGGGATTGAATGAACAGGAAGTGAAGGAATTTGATCCTCCTTCTGAGGTCCGAGCAGTGATCGAGGGCCAGTTCCTCTCAATGCGAG
CTCATTCTGAAAGATTTGGCATGCCTTCCCCTCCAAAACGAATAATAGCTACCGGAGGAGCATCAGCTAATGGTAGCATTTTGAACTCTTTAGCATCGAT
ATTTGGCTGTGATGTCTATACAGTCCAACAACCCGATTCTGCTTCGCTTGGAGGTGCATTGAGGGCTGCTCATGGCTGGCTGTGCAGTCAGAAAGGAAGT
TTTGTGCCAATTGCAGACCTGTACGAGGGCAAGTTAGAGAAGTCAGCTCTGAGCTGCAAGCTTTCCGTGAAAGCTGGGGACCAAGAACTGGTTTCCAAGT
ATGCTTTATTGATGAAGAAGAGAATGGAGATAGAGAATCGCCTTGTCAAAGATCTAGGACGATGCTGA
AA sequence
>Potri.019G077600.3 pacid=42773777 polypeptide=Potri.019G077600.3.p locus=Potri.019G077600 ID=Potri.019G077600.3.v4.1 annot-version=v4.1
MALPHGSLFLGFDSSTQSLKATVLDSNLNIVKSEQIHFDSDLPHYKTKDGVYRDPSDNGRIVSPTLLWVEALELVLQRLVKSGLDFGKVAAVSGSGQQHG
SVYWKKGGSGILSSLDSKKPLVDQLGDAFSIKESPVWMDSSTTTQCREIEKAVGSALELSQITGSRAYERFTGPQIRKIYQTQPEAYNNTERISLVSSFM
ASLLVGAYASIDHTDGAGMNLMDINQRVWSKKVLEVTAPGLEEKLGKLAPAHAVAGNIASYFVERYNFNKNCLVVQWSGDNPNSLAGLTLSVPGDLAISL
GTSDTVFGIASDPKPGLEGHVFPNPVDTQGYMVMLCYKNGSLTREDVRNRCAEKSWEIFNKYLEQTPALNGGKMGFYYKDHEILPPLPVGFHRYVLPNFT
GNNVEGLNEQEVKEFDPPSEVRAVIEGQFLSMRAHSERFGMPSPPKRIIATGGASANGSILNSLASIFGCDVYTVQQPDSASLGGALRAAHGWLCSQKGS
FVPIADLYEGKLEKSALSCKLSVKAGDQELVSKYALLMKKRMEIENRLVKDLGRC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G49650 XK2, XK-2 XYLULOSE KINASE 2, xylulose ki... Potri.019G077600
[exp]
0 1
AT4G27450 Aluminium induced protein with... Potri.004G040600
[exp]
1.00 0.7783
AT1G14685 BBR_BPC BBR/BPC2, ATBPC... basic pentacysteine 2 (.1.2.3) Potri.010G101400
[exp]
7.34 0.7438
AT3G02700 NC domain-containing protein-r... Potri.004G078700
[exp]
10.19 0.7139
AT1G31650 ATROPGEF14, ROP... RHO guanyl-nucleotide exchange... Potri.001G127300
[exp]
16.24 0.6442
AT3G42170 BED zinc finger ;hAT family di... Potri.011G104000
[exp]
16.52 0.6104
AT1G32400 TOM2A tobamovirus multiplication 2A ... Potri.001G146100
[exp]
20.34 0.6487 Pt-TOM2.2
AT4G03110 AtRBP-DR1 RNA-binding protein-defense re... Potri.014G135540
[exp]
25.03 0.6205
AT4G10100 CNX7, SIR5 "co-factor for nitrate, reduct... Potri.019G070801
[exp]
28.63 0.6445
AT5G48150 GRAS PAT1 phytochrome a signal transduct... Potri.014G164400
[exp]
32.12 0.6057
AT1G23390 Kelch repeat-containing F-box ... Potri.010G042900
[exp]
32.58 0.6688

Potri.019G077600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.