Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ZW18.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58350 1037 / 0 ZW18 Putative serine esterase family protein (.1.2.3) AT1G09980 1014 / 0 Putative serine esterase family protein (.1.2) AT4G25770 43 / 0.0006 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G104400 [exp] 1356 / 0 AT1G58350 1027 / 0.0 Putative serine esterase family protein (.1.2.3) Potri.001G079400 [exp] 49 / 8e-06 AT5G51180 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G113000 [exp] 47 / 5e-05 AT1G10040 471 / 2e-165 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G151300 [exp] 45 / 0.0001 AT5G51180 541 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.018G096035 [exp] 45 / 0.0002 AT4G25770 502 / 1e-177 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038351 [exp] 1101 / 0 AT1G09980 1025 / 0.0 Putative serine esterase family protein (.1.2) Lus10036214 [exp] 659 / 0 AT1G58350 640 / 0.0 Putative serine esterase family protein (.1.2.3) Lus10036215 [exp] 433 / 5e-147 AT1G58350 349 / 3e-115 Putative serine esterase family protein (.1.2.3) Lus10042993 [exp] 48 / 3e-05 AT5G51180 501 / 1e-178 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10032496 [exp] 45 / 0.0002 AT5G51180 525 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10006982 [exp] 44 / 0.0004 AT4G25770 432 / 4e-150 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10001320 [exp] 43 / 0.0006 AT4G25770 436 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF05057 [poplar] [flax] DUF676 Putative serine esterase (DUF676) CL0028 [poplar] [flax] PF12394 [poplar] [flax] DUF3657 Protein FAM135
Representative CDS sequence Show only first row Show all	>Potri.019G077700.2 pacid=42773175 polypeptide=Potri.019G077700.2.p locus=Potri.019G077700 ID=Potri.019G077700.2.v4.1 annot-version=v4.1 ATGTTTGAAACAGTGCAAGAAATTGCTGTTTACATTCACAGGTTTCACAACCTAGACCTCTTCCAGCAAGGATGGTATCAAATGAAGATCAGCATGAGAT GGGAAGATAGTGAGTATACTTCCTTAGCAACCCCTGCAAGGGTTGTTCAATATGAAGCTCCTGATCTGGGTGGTGAAAACATATATGGGATATGGAGGAT TGATGATACAGACAATAGTTTCTTGACACAGCCTTTTCGGATTAAATATGCGAGACAAGATATTCGTTTATCTATCATGATTTCCTTCACTCTACCTCTT GGTGAAAATGAGGGTCCATCAACCTCTGCTGTAATTTTGAAATTCGAGCTTATGCAAGCTCCCATGACAGATACCATGGTTGAGCTGCTGGCTTATCCGG ATGCTTCTTCTGTCGCAGTCCATGAATTTAGAATTCCTCCTAAAGCTCTTCTAGGATTGCATTCATATTGCCCTGTCCACTTTGATGCATTTCATTCTGT GCTTGTTGATGTTAGCGTGCATATCAGTCTATTGAAAGCTGGTTCTTTCTTGAAGGTACTCAGTGGTTCTTACGGTCAAGATGCTACTGCCAAAATTAGT GATGGGTCCCACCAAGCATTGGGTCTAGTGGCTTCTTTAGATATAAAAAAGATCACACTTGTTAAAGCATTATTAGCTGCCCGCAACACATTGCTGGAAG AGCTACAAAAAATTAGCAAAGGCATTGAGCGCACTATTGATGTATCTGATTTTGCTTCCAACGTGGATGATGTGAGCATGTTTGATTCTATTGTGCAAGC AAATCTGGTTACTGCTGATGTTGCAGTTTCAGGACATGGAAAGCCACAGAATGGCCTTGAGAAAGCAAACAGCACTATAGATTTTCAAAGTGATAATTTG CCCCACATTTCATCGAAGGCTGCTGTTGTGAACATCTTTCATTCATTGGGCGCTCAATTATCATATTTATGGAGCATTTTTCTGCAGTTCCACAGGGCAA ACAAAACAAAAATACTGGAGTTTCTGCGTGATGTGTGGACTAAAGATCGACGAGCTGAATGGTCAATATGGATGGTGTACTCTAAGGTTGAGATGCCTCA TCATTACATGAGCAGTGGAAGTGATGATTCCTCCCATCATGGCCATAGAAGAGTTTCGAGTTTGTTGAATCCTGCCCAGAGTGCAGCTACACGTGCTGAC CTTCATCGGCGAAGTATTGCCCAAATGAGGATTAATAATCGGTCAATTCAAGACATGTATATATTTGGGGATCTGCTACGGATTCCTATTATTATTGTGG AACGTGTAACTAATGCACCACTGCGTACTCTTAGTGAAAATTCGTTCTTCAAAAATTTGGACCTGGTAGATGCACATGGCTCGTACAGTGGACCTAGCAC TGAATCTGAAGCTGGTAAGAAGCAACCTAGTGCTGCACTGTCAAAAAATGGTCGTGAATTGAAGGCTGTCATCTTTGTGCATGGATTTCAGGGACACCAT CTGGATTTACGGCTTGTTCGCAATCAATGGCTTTTAATAGACCCCAAGATGGAGTTCCTTATGTCAGAGGTAAATGAAGACAAAACATCTGGAGACTTTA GAGAAATGGGACAAAGGCTGGCAGAGGAAGTTATCTCTTTCCTTAAAAAGAAAATGGATAAAGTTTCAAGATCTGGTCTGTTAAGGGATATCAAGCTTAG CTTTGTTGGACATTCTATTGGAAATATTATCATAAGAACAGCATTAGCAGAGAGCATAATGGAACCATACCTAAGATATCTTCACACATATGTTTCTATA TCTGGTCCGCATTTGGGGTATCTTTACAGTTCAAACTCCCTGTTTAACTCTGGGATGTGGCTTTTGAAAAAACTTAAGGGAACTCAGTGCATTCATCAAC TTACGTTCACAGATGACCCAAATCTCCAAAATACTTTCTTGTACAAACTCTGCGAGCAGAAGACATTGGAGAATTTCAGGCATATAGTACTGCTATCTTC ACCCCAGGATGGTTACGTACCATATCATTCTGCCAGAATTGAACTGTGCCAGGCTGCTTCCTTGGACCACTCAAAAAAGGGTAGAGTGTTCCTGCAGATG CTGAATAATTGTTTGGATCAGATACGAGCCCCCACACCTGAGCATCGACTATTCATGCGCTGTGATGTAAACTTTGATACCTCCAGCTATGGCAGGAGTT TGAACACAATCATTGGGCGAGCTGCTCATATTGAGTTTTTGGAGTCTGATGTTTTTGCAAAATTCATAATGTGGTCTTTCCAGGAACTATTCCGTTGA
AA sequence Show only first row Show all	>Potri.019G077700.2 pacid=42773175 polypeptide=Potri.019G077700.2.p locus=Potri.019G077700 ID=Potri.019G077700.2.v4.1 annot-version=v4.1 MFETVQEIAVYIHRFHNLDLFQQGWYQMKISMRWEDSEYTSLATPARVVQYEAPDLGGENIYGIWRIDDTDNSFLTQPFRIKYARQDIRLSIMISFTLPL GENEGPSTSAVILKFELMQAPMTDTMVELLAYPDASSVAVHEFRIPPKALLGLHSYCPVHFDAFHSVLVDVSVHISLLKAGSFLKVLSGSYGQDATAKIS DGSHQALGLVASLDIKKITLVKALLAARNTLLEELQKISKGIERTIDVSDFASNVDDVSMFDSIVQANLVTADVAVSGHGKPQNGLEKANSTIDFQSDNL PHISSKAAVVNIFHSLGAQLSYLWSIFLQFHRANKTKILEFLRDVWTKDRRAEWSIWMVYSKVEMPHHYMSSGSDDSSHHGHRRVSSLLNPAQSAATRAD LHRRSIAQMRINNRSIQDMYIFGDLLRIPIIIVERVTNAPLRTLSENSFFKNLDLVDAHGSYSGPSTESEAGKKQPSAALSKNGRELKAVIFVHGFQGHH LDLRLVRNQWLLIDPKMEFLMSEVNEDKTSGDFREMGQRLAEEVISFLKKKMDKVSRSGLLRDIKLSFVGHSIGNIIIRTALAESIMEPYLRYLHTYVSI SGPHLGYLYSSNSLFNSGMWLLKKLKGTQCIHQLTFTDDPNLQNTFLYKLCEQKTLENFRHIVLLSSPQDGYVPYHSARIELCQAASLDHSKKGRVFLQM LNNCLDQIRAPTPEHRLFMRCDVNFDTSSYGRSLNTIIGRAAHIEFLESDVFAKFIMWSFQELFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G58350		ZW18	Putative serine esterase fami...		Potri.019G077700 [exp]	0	1	Pt-ZW18.1
AT3G28430			unknown protein		Potri.006G204600 [exp]	6.08	0.8897
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Potri.018G067700 [exp]	7.07	0.8679
AT1G75850		VPS35B	VPS35 homolog B (.1)		Potri.002G019400 [exp]	10.77	0.8448
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Potri.002G254600 [exp]	17.49	0.8575
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Potri.015G026100 [exp]	18.33	0.8257
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Potri.004G050150 [exp]	22.00	0.8071
AT5G12480		CPK7	calmodulin-domain protein kina...		Potri.001G257100 [exp]	29.29	0.8359	Pt-CPK7.2,CPK14
AT4G38200			SEC7-like guanine nucleotide e...		Potri.004G208400 [exp]	32.58	0.8315
AT1G45150			unknown protein		Potri.014G180700 [exp]	34.89	0.8141
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Potri.015G124200 [exp]	35.84	0.8445

Compare expression of checked genes

Potri.019G077700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.