Plant FIBer expression Database

Potri.019G078000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G224600
[exp]
52 / 1e-08 AT4G24275 / unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.019G078000.2 pacid=42774149 polypeptide=Potri.019G078000.2.p locus=Potri.019G078000 ID=Potri.019G078000.2.v4.1 annot-version=v4.1
ATGAATGGTTACTCAAAGATTGGACAAGTTAGCATCTCAAAATCAAGATCTGTAGATCTTTCAGAGCACCACACACCTCTACAAACACCTGGGCTTACAT
CAAACCATAGTTCAGAGCGCAGAGTGACTACAGAGATTCATGACAGCATGTGCACTGCAAACCATGATTCCCTTCCAGAGAAGGGACAAGAAGAAGAAGT
TGGAGAGATATTTGGGGTGATTTTAAGCAGAAGCTGTTCTGCTTCTTCTCGTAGTTTAAAGATTGACAAACAAAATCCAGCTAAACTTGAGAATGCAATC
AAAAGGGCGTTTTCTATGAGCAGATCATCTTCAGTTTCACAAGGGTACTGCCGGATCCACCACCAAAGTGATTTCATAGCTGATGAAGGTAAAGCAACTC
TACCACCTGCAAGAAACACCAAGAAAAACAGAGGCAAGATCTTTAATGCTTGTAGGCTTCTCTTTGGATTCTAG
AA sequence
>Potri.019G078000.2 pacid=42774149 polypeptide=Potri.019G078000.2.p locus=Potri.019G078000 ID=Potri.019G078000.2.v4.1 annot-version=v4.1
MNGYSKIGQVSISKSRSVDLSEHHTPLQTPGLTSNHSSERRVTTEIHDSMCTANHDSLPEKGQEEEVGEIFGVILSRSCSASSRSLKIDKQNPAKLENAI
KRAFSMSRSSSVSQGYCRIHHQSDFIADEGKATLPPARNTKKNRGKIFNACRLLFGF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G24275 unknown protein Potri.019G078000
[exp]
0 1
AT2G40435 unknown protein Potri.013G154100
[exp]
9.89 0.6677
AT1G69040 ACR4 ACT domain repeat 4 (.1.2) Potri.015G100300
[exp]
24.39 0.7094
AT1G28650 GDSL-like Lipase/Acylhydrolase... Potri.001G463900
[exp]
69.33 0.7074
AT3G55240 Plant protein 1589 of unknown ... Potri.010G211500
[exp]
114.58 0.6215
AT2G30520 RPT2 ROOT PHOTOTROPISM 2, Phototrop... Potri.013G159000
[exp]
123.20 0.6698 Pt-RPT2.4
AT4G32800 AP2_ERF Integrase-type DNA-binding sup... Potri.018G085700
[exp]
208.76 0.6237
AT5G13460 IQD11 IQ-domain 11 (.1) Potri.001G021000
[exp]
232.82 0.6169

Potri.019G078000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.