Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75280 169 / 2e-51 NmrA-like negative transcriptional regulator family protein (.1) AT1G75290 166 / 3e-50 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G75300 166 / 4e-50 NmrA-like negative transcriptional regulator family protein (.1) AT4G39230 165 / 5e-50 NmrA-like negative transcriptional regulator family protein (.1) AT1G19540 155 / 2e-46 NmrA-like negative transcriptional regulator family protein (.1) AT1G32100 155 / 3e-46 ATPRR1 pinoresinol reductase 1 (.1) AT4G13660 137 / 3e-39 ATPRR2 pinoresinol reductase 2 (.1) AT4G34540 130 / 2e-36 NmrA-like negative transcriptional regulator family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G103701 [exp] 325 / 1e-112 AT1G75280 271 / 4e-90 NmrA-like negative transcriptional regulator family protein (.1) Potri.013G103850 [exp] 322 / 1e-111 AT1G75280 272 / 2e-90 NmrA-like negative transcriptional regulator family protein (.1) Potri.007G123700 [exp] 263 / 2e-88 AT1G75280 284 / 4e-95 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118100 [exp] 174 / 2e-53 AT4G39230 501 / 0.0 NmrA-like negative transcriptional regulator family protein (.1) Potri.002G034400 [exp] 172 / 5e-53 AT1G75280 467 / 2e-167 NmrA-like negative transcriptional regulator family protein (.1) Potri.005G228700 [exp] 171 / 3e-52 AT1G75280 451 / 3e-161 NmrA-like negative transcriptional regulator family protein (.1) Potri.013G104000 [exp] 162 / 2e-51 AT4G39230 96 / 6e-25 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118300 [exp] 159 / 5e-48 AT4G39230 488 / 8e-176 NmrA-like negative transcriptional regulator family protein (.1) Potri.001G133300 [exp] 150 / 3e-44 AT1G32100 462 / 2e-165 pinoresinol reductase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042311 [exp] 171 / 2e-52 AT4G39230 489 / 4e-176 NmrA-like negative transcriptional regulator family protein (.1) Lus10042313 [exp] 170 / 2e-52 AT4G39230 369 / 2e-129 NmrA-like negative transcriptional regulator family protein (.1) Lus10026350 [exp] 170 / 5e-52 AT4G39230 454 / 3e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10026348 [exp] 170 / 7e-52 AT4G39230 442 / 2e-157 NmrA-like negative transcriptional regulator family protein (.1) Lus10040442 [exp] 167 / 6e-51 AT4G39230 462 / 2e-165 NmrA-like negative transcriptional regulator family protein (.1) Lus10026351 [exp] 167 / 8e-51 AT4G39230 481 / 4e-173 NmrA-like negative transcriptional regulator family protein (.1) Lus10023557 [exp] 168 / 9e-50 AT4G39230 461 / 2e-162 NmrA-like negative transcriptional regulator family protein (.1) Lus10012143 [exp] 146 / 9e-43 AT1G32100 447 / 1e-159 pinoresinol reductase 1 (.1) Lus10010403 [exp] 146 / 1e-42 AT1G32100 446 / 1e-158 pinoresinol reductase 1 (.1) Lus10007599 [exp] 148 / 2e-41 AT5G48790 413 / 3e-141 Domain of unknown function (DUF1995) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF05368 [poplar] [flax] NmrA NmrA-like family
Representative CDS sequence Show only first row Show all	>Potri.019G078100.1 pacid=42773795 polypeptide=Potri.019G078100.1.p locus=Potri.019G078100 ID=Potri.019G078100.1.v4.1 annot-version=v4.1 ATGAAAGTCTCTGGTAACATAAAGAGGTTCATTCCATCAGATTTTGGAATCGAGGAGGATCGGGTTTCTCCATTGCCACCATTTCAAGCTTTTCTTGACA AGAAGAGAAAGGTAAGAAGGGCCGTAGAAGCAGCTGGGATACCATACACCTTTGTTGCTGCAAATTGTTGTGGTGCCTACTTTATCAATATATTACTTCG TCCCCAGGCGCAACCACGTGATATCACTGTTTATGGCGACGGACAAGCCAAGGCGGTTCTAAACTATGAAGAGGATGTTGCCATGTATACCATCAAGGTA GCAGATGATGCAAGAACATTGAACCGAGTTGTAACCTATCAGCCACCCAAGAACATCGTTTCTCAGCTTGAACTAATCTCTCTATGGGAAAAGAAGACGG GTCAGAATTTTATTAGGGTTCATCTCTCCGAGGAAGAGCTTGTGAAGCTCTCTGAGAGCTTACCACCTCCACAAAATATTCCAGTGTCTATCCTTCACAG TGTATTCATAAAGGGTGATATGACTGGCTACGAACTAGGTGATGATGACTTGGAGGCTTCGCAGTTATATCTAGACTACGAGTACACAGCAATTGATAAG CTTCTCGATATTTTCCTGATCGACCCTCCGGAGCCAGCAATGGGAGCTTTTGAATGA
AA sequence Show only first row Show all	>Potri.019G078100.1 pacid=42773795 polypeptide=Potri.019G078100.1.p locus=Potri.019G078100 ID=Potri.019G078100.1.v4.1 annot-version=v4.1 MKVSGNIKRFIPSDFGIEEDRVSPLPPFQAFLDKKRKVRRAVEAAGIPYTFVAANCCGAYFINILLRPQAQPRDITVYGDGQAKAVLNYEEDVAMYTIKV ADDARTLNRVVTYQPPKNIVSQLELISLWEKKTGQNFIRVHLSEEELVKLSESLPPPQNIPVSILHSVFIKGDMTGYELGDDDLEASQLYLDYEYTAIDK LLDIFLIDPPEPAMGAFE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75280			NmrA-like negative transcripti...		Potri.019G078100 [exp]	0	1
AT4G27220			NB-ARC domain-containing disea...		Potri.019G020500 [exp]	14.83	0.8025
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.002G156800 [exp]	17.08	0.7880
AT2G18370			Bifunctional inhibitor/lipid-t...		Potri.009G025200 [exp]	22.18	0.7743
AT3G14460			LRR and NB-ARC domains-contain...		Potri.011G005700 [exp]	23.68	0.7234
AT5G57340			unknown protein		Potri.018G090000 [exp]	24.79	0.7798
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.012G112700 [exp]	27.54	0.7350
AT5G35670		IQD33	IQ-domain 33 (.1)		Potri.014G161000 [exp]	28.00	0.7628
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G219600 [exp]	30.04	0.7363
					Potri.019G017150 [exp]	30.65	0.7545
AT4G35160			O-methyltransferase family pro...		Potri.013G121400 [exp]	32.46	0.7030	Pt-OOMT2.15

Compare expression of checked genes

Potri.019G078100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.