Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47840 331 / 2e-114 AMK2 adenosine monophosphate kinase (.1) AT5G35170 246 / 1e-77 adenylate kinase family protein (.1.2) AT5G63400 119 / 5e-32 ADK1 adenylate kinase 1 (.1.2) AT5G50370 114 / 3e-30 Adenylate kinase family protein (.1) AT5G26667 96 / 2e-23 PYR6 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT4G25280 86 / 1e-19 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G60180 85 / 1e-19 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G37250 79 / 9e-17 ADK, ATPADK1 adenosine kinase (.1) AT2G39270 77 / 3e-16 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G01820 45 / 3e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G103400 [exp] 466 / 1e-167 AT5G47840 347 / 1e-120 adenosine monophosphate kinase (.1) Potri.018G113400 [exp] 242 / 9e-76 AT5G35170 838 / 0.0 adenylate kinase family protein (.1.2) Potri.006G189201 [exp] 124 / 2e-35 AT5G35170 158 / 1e-46 adenylate kinase family protein (.1.2) Potri.012G095300 [exp] 124 / 7e-34 AT5G63400 419 / 1e-150 adenylate kinase 1 (.1.2) Potri.015G092800 [exp] 120 / 2e-32 AT5G63400 425 / 6e-153 adenylate kinase 1 (.1.2) Potri.014G043300 [exp] 93 / 2e-22 AT5G26667 358 / 2e-127 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.002G134600 [exp] 92 / 4e-22 AT5G26667 345 / 1e-122 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.008G046100 [exp] 89 / 3e-20 AT2G37250 377 / 1e-132 adenosine kinase (.1) Potri.014G104700 [exp] 84 / 4e-19 AT5G26667 275 / 8e-95 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037995 [exp] 293 / 9e-101 AT5G47840 315 / 9e-110 adenosine monophosphate kinase (.1) Lus10003504 [exp] 279 / 4e-94 AT5G47840 300 / 1e-102 adenosine monophosphate kinase (.1) Lus10009228 [exp] 272 / 3e-91 AT5G47840 296 / 3e-101 adenosine monophosphate kinase (.1) Lus10009478 [exp] 266 / 2e-90 AT5G47840 293 / 1e-101 adenosine monophosphate kinase (.1) Lus10036326 [exp] 224 / 7e-70 AT5G35170 658 / 0.0 adenylate kinase family protein (.1.2) Lus10016757 [exp] 125 / 2e-34 AT5G63400 416 / 2e-149 adenylate kinase 1 (.1.2) Lus10022453 [exp] 125 / 3e-34 AT5G63400 411 / 2e-147 adenylate kinase 1 (.1.2) Lus10031611 [exp] 93 / 2e-22 AT5G26667 343 / 1e-121 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10033733 [exp] 92 / 3e-21 AT5G26667 336 / 2e-117 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10023476 [exp] 86 / 4e-19 AT2G37250 407 / 2e-144 adenosine kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00406 [poplar] [flax] ADK Adenylate kinase
Representative CDS sequence Show only first row Show all	>Potri.019G078200.5 pacid=42773858 polypeptide=Potri.019G078200.5.p locus=Potri.019G078200 ID=Potri.019G078200.5.v4.1 annot-version=v4.1 ATGGCTGCTACAAGCTCCTGCAATTTCAACTGGGGAGTGAATGGAAAAGGGACCCCTGAACAGCCTTGTTCTTCCTCAAAGTCCTCCCAGATCCTCTTCT CTTCTAACTTATCTTTTTGTTACAGTAACATCAGATATTGCCTCTCTCTTCGTTCCCATCAAACCCTTTTGTCCACTCGTTTCAACGAAACCAAGAATTC AGCTTTTGTTGTGGCATCAGCAAAGGCAGACCCTTTGAAGATAATGATTTCCGGAGCTCCTGCTTCTGGTAAAGGTACTCAATGTGAGCTCATCACTAAG AAATATGGTTTGGTGCACATTGCTGCCGGAGACCTTCTGAGGGCAGAAATTGCTTCAGGAAGTGAGAATGGAAAGCGAGCAAAGGAATACATGGAGAAAG GACAGTTGGTCCCAAATGAAATAGTTGTCATGATGGTAAAGGAGCGTCTGCTGCTGCCAGACTCTCAAGAAAATGGTTGGCTTTTAGATGGATACCCAAG GAGCTTACTACAAGCAACTGCTCTTAAAGAATTTGGCTTCCAGCCCGATCTTTTTATTCTCCTGGAAGTCAATGAAGAGATTCTTGTTGAAAGAGTGGTT GGACGTAGGTTAGACCCTGTTACTGGGAAGATATACCACCTCAAGTATTCTCCCCCTGAGACTGAAGAAATTGCTGCCAGGCTCACCCAACGTTTTGATG ACACTGAAGAAAAGGTGAAGTTGCGGTTGCAAACTCATCATCAAAATGTGGAGGCGGTACTTCTAATGTATGAAGACATTACACTCAAGGTTAATGGAAA TGTTCCCAAAGAAGATGTGTTTGCACAAATTGATGGTGCTCTCACAAAATTACATGAGGATAGGAAGTTGATTTAA
AA sequence Show only first row Show all	>Potri.019G078200.5 pacid=42773858 polypeptide=Potri.019G078200.5.p locus=Potri.019G078200 ID=Potri.019G078200.5.v4.1 annot-version=v4.1 MAATSSCNFNWGVNGKGTPEQPCSSSKSSQILFSSNLSFCYSNIRYCLSLRSHQTLLSTRFNETKNSAFVVASAKADPLKIMISGAPASGKGTQCELITK KYGLVHIAAGDLLRAEIASGSENGKRAKEYMEKGQLVPNEIVVMMVKERLLLPDSQENGWLLDGYPRSLLQATALKEFGFQPDLFILLEVNEEILVERVV GRRLDPVTGKIYHLKYSPPETEEIAARLTQRFDDTEEKVKLRLQTHHQNVEAVLLMYEDITLKVNGNVPKEDVFAQIDGALTKLHEDRKLI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47840		AMK2	adenosine monophosphate kinase...		Potri.019G078200 [exp]	0	1
AT5G58200			Calcineurin-like metallo-phosp...		Potri.006G188200 [exp]	3.46	0.6760
AT3G15750			Essential protein Yae1, N-term...		Potri.003G201500 [exp]	12.24	0.6038
AT3G14470			NB-ARC domain-containing disea...		Potri.017G015600 [exp]	16.70	0.6335
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Potri.005G000166 [exp]	17.54	0.6123
AT5G17400		ER-ANT1	endoplasmic reticulum-adenine ...		Potri.012G062500 [exp]	19.28	0.6262
AT1G44790			ChaC-like family protein (.1)		Potri.005G176300 [exp]	19.79	0.6232
AT3G14470			NB-ARC domain-containing disea...		Potri.017G015200 [exp]	20.29	0.6442
AT1G11480			eukaryotic translation initiat...		Potri.011G031900 [exp]	28.37	0.5733
AT3G59470	FAR1_related		Far-red impaired responsive (F...		Potri.017G029100 [exp]	32.49	0.5458
AT1G20823			RING/U-box superfamily protein...		Potri.007G064401 [exp]	39.79	0.6214

Compare expression of checked genes

Potri.019G078200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.