Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72180 1060 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT1G09970 628 / 0 RLK7, LRRXI-23 ,LRR XI-23 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G49660 623 / 0 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G19700 612 / 0 IKU2 HAIKU2, Leucine-rich repeat protein kinase family protein (.1) AT1G28440 603 / 0 HSL1 HAESA-like 1 (.1) AT1G75820 569 / 0 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65710 553 / 0 HSL2 HAESA-like 2 (.1) AT5G25930 550 / 2e-180 Protein kinase family protein with leucine-rich repeat domain (.1) AT4G28650 547 / 3e-179 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G28490 544 / 3e-178 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G106800 [exp] 669 / 0 AT1G09970 1204 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.009G081800 [exp] 638 / 0 AT1G09970 1033 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.004G049100 [exp] 610 / 0 AT1G28440 1387 / 0.0 HAESA-like 1 (.1) Potri.002G111700 [exp] 608 / 0 AT5G49660 1229 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.011G058100 [exp] 606 / 0 AT1G28440 1309 / 0.0 HAESA-like 1 (.1) Potri.006G235800 [exp] 560 / 0 AT5G25930 1074 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.013G048800 [exp] 560 / 0 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G107600 [exp] 557 / 0 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.002G019900 [exp] 556 / 0 AT1G75820 1226 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009476 [exp] 1114 / 0 AT1G72180 995 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10007232 [exp] 650 / 0 AT1G09970 1186 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10028232 [exp] 647 / 0 AT1G09970 1181 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10007233 [exp] 603 / 0 AT5G49660 1224 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10028234 [exp] 586 / 0 AT5G49660 1234 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10013968 [exp] 578 / 0 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10015393 [exp] 573 / 0 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10018636 [exp] 567 / 0 AT1G28440 1203 / 0.0 HAESA-like 1 (.1) Lus10000814 [exp] 559 / 0 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10027951 [exp] 551 / 1e-180 AT1G08590 1256 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.019G078400.2 pacid=42773642 polypeptide=Potri.019G078400.2.p locus=Potri.019G078400 ID=Potri.019G078400.2.v4.1 annot-version=v4.1 ATGGCCAAAACCTCAGTTCTTTCCCTCCAATTCATTATAACTGTCATTTGCCTTCTTTCCCTCTCAAGTTTCCCACCTTCTTTGTCTTTGGATGTTGAGA CTCAAGCCTTGCTTGATTTCAAAAGCCAGCTGAAAGACCCTTTGAATGTTTTAAAGTCATGGAAAGAATCAGAATCTCCATGTGAATTCTCAGGGATTAC TTGTGATCCTCTATCTGGGAAAGTGACTGCAATCTCATTTGATAATCAGTCTCTCTCGGGCGTGATTTCACCATCCATTTCTGCCCTTGAAAGCCTGATG TCCCTATGGTTGCCCTCAAATGCTATTTCCGGGAAGCTTCCAGATGGAGTCATTAACTGTAGCAAGCTCAGAGTACTGAATCTCACTGGGAATAAAATGG TGGGAGTCATACCAGATCTCTCTTCGTTGAGAAACTTGGAGATTCTTGATTTGTCAGAGAACTACTTTTCTGGTAGATTCCCATCCTGGATTGGCAATTT AAGTGGACTACTTGCGCTTGGTTTAGGGACAAATGAATATCATGTTGGTGAAATCCCTGAGAGTATTGGAAACCTGAAGAACTTGACTTGGCTCTTTCTG GCAAATTCCCATTTGAGAGGAGAGATTCCAGAATCCATATTCGAACTGGAGAATTTGCAGACATTGGATATCTCTCGGAACAAGATCTCTGGGCAGTTCC CAAAATCAATATCCAAGTTGCGAAAGCTTACTAAAATTGAGCTCTTTTATAATAATTTGACTGGGGAAATCCCACCAGAGCTTGCCAATCTCACACTTCT CCAGGAATTTGATGTTTCTTCTAATCAGTTATATGGGAAGCTGCCTGAGGGAATTGGTAGCTTGAAGAGTTTGACGGTTTTTCAGGGTCATCAAAACAAC TTTTCAGGAGAAATCCCTGCTGGTTTTGGAGAGATGCGCTATCTTAATGGCTTCTCAATCTACCAAAACAATTTTTCAGGAGAGTTCCCAACCAATTTCG GCCGGTTCTCACCATTAAACAGTATTGATATATCTGAAAATCAATTTTCAGGTAGTTTTCCCAGGTTCTTGTGCGAAAGCAAGCAGTTACAGTACTTGCT TGCCCTGGGAAACCGTTTTTCTGGAGTGTTACCGGATTCGTATGCTGAGTGCAAAACTTTGTGGAGGTTCAGGGTCAATAAGAATCAGTTGACAGGGAAG ATTCCGGAGGGGGTTTGGGCAATGCCACTTGCCAGTATAATTGATTTCAGCGATAACGACTTCACTGGTGAAGTATCTCCTCAAATTAGGTTGTCTACCA GCTTGAATCAGTTGATTTTGCAAAACAATAGGTTTTCGGGTCAGCTCCCATCTGAACTTGGCAAGCTAATGAATCTAGAGAAGTTGTACTTGAATAATAA TAACTTCTCTGGTGTAATACCTTCTGATATTGGTTCTTTGCAGCAGTTATCATCATTGCATTTGGAAGAGAATTCATTGACAGGATCCATACCATCAGAA CTGGGGGATTGTGCCAGAGTTGTCGACTTGAATATTGCTTCAAATTCTTTAAGTGGTCGTATCCCAAGTACTATTACATTGATGAGCTCTTTAAACTCTC TGAATCTTTCACGAAACAAGATAACTGGTTTGATCCCGGAAGGTTTAGAAAAGTTGAAGCTAAGTTCCATTGATTTGTCTGAAAACCAGTTGTCAGGAAG AGTTCCCTCAGTTCTTTTGACAATGGGTGGAGACAGAGCATTTATTGGTAACAAGGAACTTTGTGTTGATGAAAATTCCAAAACCATTATAAATTCAGGG ATAAAGGTTTGCTTGGGAAGACAAGATCAAGAAAGGAAGTTTGGAGATAAGCTGGTCTTGTTCTCAATAATAGCATGTGTGCTGGTTTTTGTTTTAACTG GTATGCTACTTTTGAGCTACCGGAACTTCAAGCATGGTCAAGCTGAGATGAAAAACGACTTGGAAGGGAAGAAGGAAGGAGACCCGAAATGGCAAATTTC ATCTTTCCACCAATTGGATATTGATGCAGATGAAATATGTGATCTGGAAGAAGACAATTTGATTGGCTGTGGTGGCACAGGAAAAGTGTATCGCTTGGAT TTGAAGAAAAACCGTGGTGCAGTAGCTGTAAAGCAACTGTGGAAGGGAGATGGTCTGAAGTTCCTAGAAGCCGAAATGGAGATTTTGGGGAAGATCAGGC ATAGGAATATCCTGAAGCTTTATGCTAGTTTACTCAAAGGAGAATCAAGTTTTCTGGTTTTCGAGTACATGCCTAATGGTAACTTGTTTCAAGCACTTCA CACACGGATCAAAGATGGGCAGCCTGAATTGGATTGGAATCAGAGATATAAGATTGCTTTGGGAGCTGCTAAAGGAATTGCATATCTGCACCATGATTGC TCCCCACCTATTCTTCATAGAGATATAAAGTCAAGCAACATTTTACTTGATGAAGATAATGAGCCAAAAATTGCTGATTTTGGGGTTGCAAAGCTTGCAG AAATGTCCCTTAAGGGGTGTGATAATAGCTCATTTACTGGCACTCATGGTTATATTGCTCCAGAGATGGCATACAGTCTTAAAGTCACTGAAAAGAGTGA TGTATATAGTTTTGGTGTTGTGCTATTAGAGTTAGTCACTGGTAAAAGGCCCATCGAGGAGGCATATGGAGAAGGAAAAGATATTGCCTACTGGGTTTTA TCTCATCTCAACGACCGTGAAAACCTCCTCAAGGTTCTCGACGAAGAAGTGGCATCCGGATCTGCCCAAGAAGAAATGATCAAAGTCTTGAAGATTGGTG TCCTTTGCACGACCAAGCTTCCGAATCTGCGCCCTACCATGAGAGAGGTAGTGAAGATGCTCGTCGATGCTGATTCTTGTGCTTACAGGTCTCCTGATTA CAGTTCTGACAAAAACGAAAAAGTTTTTCTCTAG
AA sequence Show only first row Show all	>Potri.019G078400.2 pacid=42773642 polypeptide=Potri.019G078400.2.p locus=Potri.019G078400 ID=Potri.019G078400.2.v4.1 annot-version=v4.1 MAKTSVLSLQFIITVICLLSLSSFPPSLSLDVETQALLDFKSQLKDPLNVLKSWKESESPCEFSGITCDPLSGKVTAISFDNQSLSGVISPSISALESLM SLWLPSNAISGKLPDGVINCSKLRVLNLTGNKMVGVIPDLSSLRNLEILDLSENYFSGRFPSWIGNLSGLLALGLGTNEYHVGEIPESIGNLKNLTWLFL ANSHLRGEIPESIFELENLQTLDISRNKISGQFPKSISKLRKLTKIELFYNNLTGEIPPELANLTLLQEFDVSSNQLYGKLPEGIGSLKSLTVFQGHQNN FSGEIPAGFGEMRYLNGFSIYQNNFSGEFPTNFGRFSPLNSIDISENQFSGSFPRFLCESKQLQYLLALGNRFSGVLPDSYAECKTLWRFRVNKNQLTGK IPEGVWAMPLASIIDFSDNDFTGEVSPQIRLSTSLNQLILQNNRFSGQLPSELGKLMNLEKLYLNNNNFSGVIPSDIGSLQQLSSLHLEENSLTGSIPSE LGDCARVVDLNIASNSLSGRIPSTITLMSSLNSLNLSRNKITGLIPEGLEKLKLSSIDLSENQLSGRVPSVLLTMGGDRAFIGNKELCVDENSKTIINSG IKVCLGRQDQERKFGDKLVLFSIIACVLVFVLTGMLLLSYRNFKHGQAEMKNDLEGKKEGDPKWQISSFHQLDIDADEICDLEEDNLIGCGGTGKVYRLD LKKNRGAVAVKQLWKGDGLKFLEAEMEILGKIRHRNILKLYASLLKGESSFLVFEYMPNGNLFQALHTRIKDGQPELDWNQRYKIALGAAKGIAYLHHDC SPPILHRDIKSSNILLDEDNEPKIADFGVAKLAEMSLKGCDNSSFTGTHGYIAPEMAYSLKVTEKSDVYSFGVVLLELVTGKRPIEEAYGEGKDIAYWVL SHLNDRENLLKVLDEEVASGSAQEEMIKVLKIGVLCTTKLPNLRPTMREVVKMLVDADSCAYRSPDYSSDKNEKVFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72180			Leucine-rich receptor-like pro...		Potri.019G078400 [exp]	0	1
AT1G67360			Rubber elongation factor prote...		Potri.003G173100 [exp]	2.44	0.7597
AT2G21300			ATP binding microtubule motor ...		Potri.009G124500 [exp]	2.44	0.7408
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Potri.011G044900 [exp]	5.29	0.7412
AT2G23910			NAD(P)-binding Rossmann-fold s...		Potri.018G100500 [exp]	7.07	0.7211
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Potri.010G096800 [exp]	12.84	0.6719
AT4G29900		CIF1, ATACA10, ...	COMPACT INFLORESCENCE 1, autoi...		Potri.018G139800 [exp]	16.12	0.6871	Pt-ACA8.6
AT3G55760			unknown protein		Potri.008G159500 [exp]	17.60	0.7373
AT5G22390			Protein of unknown function (D...		Potri.004G201500 [exp]	18.49	0.7012
AT2G16050			Cysteine/Histidine-rich C1 dom...		Potri.010G204600 [exp]	20.00	0.7256
AT4G09020		ATISA3, ISA3	isoamylase 3 (.1)		Potri.002G100900 [exp]	21.42	0.7232

Compare expression of checked genes

Potri.019G078400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.